New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3234638 =	NA (NA)	4 (0.130)	4/266	4.1	NA	noncoding (1/86 nt)	REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_hsa_tpiA	3234671 =	NA (NA)					noncoding (34/86 nt)	REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TCTGTGTGACGGAAGAATAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAA  >  NC_000913_3_hsa_tpiA/3234527‑3234818                                                                                                                                                 |                                                                                                                                                    tCTGTGTGACGGAAGAATAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGa                                                                                                                                                 <  1:283862/149‑1 (MQ=255)                aaTAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTCACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACg                                                                                                                                  <  1:444690/149‑1 (MQ=255)                  tAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGa                                                                                                                                                 <  1:15366/132‑1 (MQ=255)                  tAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGa                                                                                                                                                 >  2:15366/1‑132 (MQ=255)                           aaaaaCGCTAAACGAGAGCCGGTAGACGATGGTGACCGAACTTTTGGATATTATAGAATCGCGATTCCAGAACTGGGCAGACATGGACGGATGCTACGCTTGCCGCCTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATa                                                                                                                       <  2:500707/149‑1 (MQ=255)                                                      gATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTa                                                                                            >  1:487291/1‑149 (MQ=255)                                                              cAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGCAGTAACGTGCTGAACGTAGGCCGGATAAGCCGTTTACGCCGCATCCGGCAAGCAACCCCCaa                                                                                    >  2:135646/1‑149 (MQ=38)                                                               aGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGCACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAAt                                                                                   >  1:16560/1‑149 (MQ=255)                                                                gggATTTTTTTTTTTTTTTAAGCTCGATTCCAGAACTGGGCATACATTGCCTGATGCGAGGCTTGCCGCGTCTTATCCGCCCTTGAGTAACGTGCTTAACGTTGTCCGGATAAGGCATTTACGCCGCATCCGGCAGGTAACTCCCAATc                                                                                  >  2:290203/1‑149 (MQ=255)                                                                     tttttGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAcc                                                                             <  1:503535/149‑1 (MQ=255)                                                                                 ggAAGCGCGATTCAAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCa                                                                 <  1:124373/149‑1 (MQ=255)                                                                                             ccAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCCCCCCtt                                                     >  2:238410/1‑149 (MQ=255)                                                                                              cAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAAACTTACCGACGACGTCCCAGCTTCACCGCttt                                                    >  2:242174/1‑149 (MQ=255)                                                                                               aGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTACCTCCCAATCTTACCAACGACGTCCCACCTTCACCGCTTTc                                                   >  1:12347/1‑149 (MQ=255)                                                                                                  acggggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGt                                                <  1:23575/146‑1 (MQ=255)                                                                                                                                      tCTTATCCGGTCGGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCCGTACCACAAATTTATTATTTGTCGCAATAGAGGTGCAg            >  2:448458/1‑149 (MQ=39)                                                                                                                                          aTCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGc        <  2:544969/149‑1 (MQ=255)                                                                                                                                               gCCTGGAGTAACGTGCTGAACGTAGCACGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCATTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGaaa   <  1:528392/149‑1 (MQ=255)                                                                                                                                                ccTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGaaaa  <  2:81356/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    TCTGTGTGACGGAAGAATAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAA  >  NC_000913_3_hsa_tpiA/3234527‑3234818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.