New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 1393453 =9 (0.080)87 (0.840) 65/262 0.9 90.9% coding (227/1614 nt) mppA murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit
?NC_000913_3_hsa_tpiA = 2515613 NA (NA)intergenic (+170/+30) insL1/yfeA IS186 transposase/putative diguanylate cyclase

Only 100 of 198 total aligned reads displayed.

GAGCGGCACAGTACTGGCAGAGAAGCAGGAGCTGGTGCGCCACATTAAAGATGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGATTTTGTCTACAGCTGGCAACGTCTGGTGGACCCAA  >  NC_000913_3_hsa_tpiA/1393304‑1393602
                                                                                                                                                     |                                                                                                                                                     
   ggtcatctggagcttacaggtggccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGga                                                                                                                                                    >  2:497074‑M1/147‑150 (MQ=255)
   ggtcatctggagcttacaggtggccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGga                                                                                                                                                    >  1:684604‑M1/147‑150 (MQ=255)
     gCACAGTACTGGCAGAGAAGCAGGAGCTGGTGCGCCACATTAAAGATGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGCAGGTCTGGTGAATCAGAACGAAAAAGGGgaga                                                                                                                                                  >  4:646486/1‑150 (MQ=255)
      catctggagcttacaggtggccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGAt                                                                                                                                                 <  2:258232‑M1/7‑1 (MQ=255)
      cacaGTACTGGCAGAGAAGCAGGAGCTGGTGCGCCACATTAAAGATGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGAt                                                                                                                                                 <  3:94724/150‑1 (MQ=255)
       atctggagcttacaggtggccattcgtgggacagtatccctgacagcctacaaagagcaagtgaagtacgcgaggcatcgtcttaacgaggcaccggggcgtcgcattcttcagatggttcacccctttagttagcgcttatGGGAGAtt                                                                                                                                                >  2:983951‑M1/143‑150 (MQ=255)
         ctggagcttacaggtggccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGt                                                                                                                                              >  2:892258‑M1/141‑150 (MQ=255)
           tACTGGCAGAGAAGCAGGAGCTGGTGCGCCACATTAAAGATGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCC                                                                                                                                            >  1:1169643‑M2/1‑150 (MQ=255)
                gCAGAGAAGCAGGAGCTGGTGCGCCACATTAAAGATGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataa                                                                                                                                       <  2:343790‑M2/150‑5 (MQ=255)
                 tacaggtggccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCg                                                                                                                                      <  3:408360‑M1/18‑1 (MQ=255)
                 tacaggtggccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCg                                                                                                                                      <  2:54744‑M1/18‑1 (MQ=255)
                     ggtggccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGc                                                                                                                                  <  4:263594‑M1/22‑1 (MQ=255)
                      gtggccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatg                                                                                                                                                       >  3:116738‑M1/128‑128 (MQ=255)
                      aaGCAGGAGCTGGTGCGCCACATTAAAGATGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgcta                                                                                                                                 <  1:835931‑M2/150‑11 (MQ=255)
                        gCAGGAGCTGGTGCGCCACATTAAAGATGAGCCTGCGTCGCTGGATCCCACTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaac                                                                                                                               >  3:641724‑M2/1‑138 (MQ=255)
                         cAGGAGCTGGTGCGCCACATTAAAGATGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaact                                                                                                                              <  2:279210‑M2/150‑14 (MQ=255)
                         cAGGAGCTGGTGCGCCACATTAAAGATGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCCGGTGAATCAGAACGAAAAAGGGGAGAATGTCCCataagcgctaact                                                                                                                              <  2:693331‑M2/150‑14 (MQ=255)
                           cattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgtattcttcagatggttcatcccttaagttagcgcttatGGGAGATTGGCCCCGGCGTTGCGACTCa                                                                                                                            >  2:728603‑M1/123‑150 (MQ=255)
                                  gTGCGCCACATTAAAGATGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttg                                                                                                                     <  1:380029‑M2/150‑23 (MQ=255)
                                   ggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGaaaa                                                                                                                    <  4:486950‑M1/36‑1 (MQ=255)
                                    gacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGgaga                                                                                                                                                  <  3:683172‑M1/6‑1 (MQ=255)
                                       agtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTaa                                                                                                                >  2:176592‑M1/111‑150 (MQ=255)
                                        cacaTTAAAGATGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAAt                                                                                                               <  4:259605/150‑1 (MQ=255)
                                         acaTTAAAGATGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCa                                                                                                                                          >  3:377625‑M2/1‑121 (MQ=255)
                                         acaTTAAAGATGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCa                                                                                                                                          <  4:377625‑M2/122‑2 (MQ=255)
                                             cctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACaa                                                                                                          >  1:258232‑M1/105‑150 (MQ=255)
                                               tgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAAcc                                                                                                        <  1:617542‑M1/48‑1 (MQ=255)
                                                 gATGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctga                                                                                                      <  4:307776‑M2/150‑38 (MQ=255)
                                                   tGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgata                                                                                                    >  2:380029‑M2/1‑111 (MQ=255)
                                                   tGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgata                                                                                                    >  1:182257‑M2/1‑111 (MQ=255)
                                                   agcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTAt                                                                                                    <  2:822595‑M1/52‑1 (MQ=255)
                                                     cctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCt                                                                                                  >  3:194629‑M1/97‑150 (MQ=255)
                                                       tacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacctttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTgg                                                                                                <  2:416821‑M1/56‑1 (MQ=255)
                                                       ccTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgat                                                                                                <  1:852774‑M2/150‑44 (MQ=255)
                                                       ccTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgat                                                                                                <  1:793058‑M2/150‑44 (MQ=255)
                                                        acaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgg                                                                                                                                                      >  1:725758‑M1/94‑95 (MQ=255)
                                                          aaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgg                                                                                                                                                      >  1:362175‑M1/92‑93 (MQ=255)
                                                              cgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTa                                                                                         <  2:1149943‑M1/63‑1 (MQ=255)
                                                              cgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTa                                                                                         <  1:1098452‑M1/63‑1 (MQ=255)
                                                              cgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTa                                                                                         >  1:552276‑M1/88‑150 (MQ=255)
                                                               gcaatggaagaacgcgatgcatcgtcgtaacgaggcaccgaggcgtcgcattcttcagatggttcatcccttacgttagcgcttatTGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTAc                                                                                        >  2:789249‑M1/87‑150 (MQ=255)
                                                                cTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgc                                                                                       <  3:440704‑M2/150‑53 (MQ=255)
                                                                  attgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCt                                                                                     <  1:1021169‑M1/67‑1 (MQ=255)
                                                                   ttgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTg                                                                                    <  1:874108‑M1/68‑1 (MQ=255)
                                                                   gATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcactaacttaagggttgtggtattacgcctgatatgatttaacgtgccga                                                                                    <  2:895712‑M2/150‑56 (MQ=255)
                                                                      cccGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatga                                                                                 <  4:119442‑M2/150‑59 (MQ=255)
                                                                       ccGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaa                                                                                <  1:467056‑M2/150‑60 (MQ=255)
                                                                        cGCTAAAGCCCTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGACAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaat                                                                               >  4:12644‑M2/1‑90 (MQ=255)
                                                                             aaGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactc                                                                          <  2:890590‑M2/150‑66 (MQ=255)
                                                                              aGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGc                                                                         >  2:259469/1‑150 (MQ=255)
                                                                               aggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTgcg                                                                                  <  1:263551‑M1/70‑1 (MQ=255)
                                                                               aggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCa                                                                        <  4:566062‑M1/80‑1 (MQ=255)
                                                                                      gCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataa                                                                 <  4:196479‑M2/150‑75 (MQ=255)
                                                                                       tcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGc                                                                >  1:649725‑M1/63‑150 (MQ=255)
                                                                                       tcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTAAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGc                                                                >  2:903003‑M1/63‑150 (MQ=255)
                                                                                       ccTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataac                                                                <  4:163251‑M2/150‑76 (MQ=255)
                                                                                        cttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCg                                                               <  2:966834‑M1/89‑1 (MQ=255)
                                                                                         ttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCgg                                                              >  2:225950‑M1/61‑150 (MQ=255)
                                                                                         ttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCgg                                                              >  3:566062‑M1/61‑150 (MQ=255)
                                                                                          taacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGa                                                             >  1:976914‑M1/60‑150 (MQ=255)
                                                                                          gCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGa                                                             <  4:522759/150‑1 (MQ=255)
                                                                                           ccAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggt                                                            >  1:393659‑M2/1‑71 (MQ=255)
                                                                                           aacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGga                                                                                                                                                    <  4:60590‑M1/4‑1 (MQ=255)
                                                                                             cgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGATgg                                                          >  3:263594‑M1/57‑150 (MQ=255)
                                                                                             agagATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtca                                                          <  4:712156‑M2/150‑82 (MQ=255)
                                                                                             agagATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattact                                                                           >  2:314425‑M2/1‑69 (MQ=255)
                                                                                             agagATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattact                                                                           <  1:314425‑M2/133‑65 (MQ=255)
                                                                                             agagATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctga                                                                                                      >  4:350124‑M2/1‑69 (MQ=255)
                                                                                             agagATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctga                                                                                                      <  3:350124‑M2/106‑38 (MQ=255)
                                                                                              gagaTTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcag                                                         <  3:506081‑M2/150‑83 (MQ=255)
                                                                                                        tCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaccttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggc                                               >  2:374556‑M2/1‑58 (MQ=255)
                                                                                                           ttCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATCGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggccca                                            <  2:229719‑M2/150‑96 (MQ=255)
                                                                                                                    ttcagatggttcaacccttaagttagcgcatatGGGAGATTGTCTCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGCGCGGATGGCACACCGGTAACGGCGCAAGAtt                                   <  2:467717‑M1/117‑1 (MQ=255)
                                                                                                                    ttcagatggttaaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGAtt                                   <  1:1051732‑M1/117‑1 (MQ=255)
                                                                                                                      cagatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGAtttt                                 >  4:76394‑M1/32‑150 (MQ=255)
                                                                                                                       ttGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcc                                <  2:16214‑M2/150‑108 (MQ=255)
                                                                                                                        gatggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGATTTTGt                               >  2:579851‑M1/30‑150 (MQ=255)
                                                                                                                         gAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgacttactatcctgatctggggccagcaattgtggctggtattggtaagcccg                              <  1:228914‑M2/150‑110 (MQ=255)
                                                                                                                         atggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGATTTTg                                >  1:516696‑M1/29‑148 (MQ=255)
                                                                                                                         atggttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGATTTTGTc                              <  3:222973‑M1/122‑1 (MQ=255)
                                                                                                                            gttcaacccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAAAGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGATTTTGTCTAc                           <  2:186578‑M1/125‑1 (MQ=255)
                                                                                                                             gTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaaga                          >  1:90122‑M2/1‑37 (MQ=255)
                                                                                                                               cggggtaaacagaacGAAAAAGGGGAGATTTTCCGataatcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaac                        >  3:73391‑M2/7‑35 (MQ=255)
                                                                                                                                tGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaact                       >  3:295953‑M2/1‑34 (MQ=255)
                                                                                                                                 acccttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGATTTTGTCTACAGCTg                      >  1:585448‑M1/21‑150 (MQ=255)
                                                                                                                                  gTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctgacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactgg                     <  3:170259‑M2/150‑119 (MQ=255)
                                                                                                                                  gTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgata                                                                                                    <  2:517439‑M2/71‑40 (MQ=255)
                                                                                                                                  gTGAATCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgactgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactgg                     <  1:320436‑M2/150‑119 (MQ=255)
                                                                                                                                     ttaagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGAtt                                   <  2:63142‑M1/117‑1 (MQ=255)
                                                                                                                                      taagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGATTTTGTCTACAGCTGGCAAc                 >  2:796908‑M1/16‑150 (MQ=255)
                                                                                                                                       tCAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactggatact                <  4:460429‑M2/150‑124 (MQ=255)
                                                                                                                                       aagttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGATTTTGTCTACAGCTGACAACg                >  4:398427‑M1/15‑150 (MQ=255)
                                                                                                                                        cAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaac                        >  1:1129366‑M2/1‑26 (MQ=255)
                                                                                                                                        cAGAACGAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaac                        <  2:1129366‑M2/141‑116 (MQ=255)
                                                                                                                                          ttagcgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTTCGCGATAACGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGATTTTGTCTACAGCTGGCAACGTCt             <  2:576496‑M1/139‑1 (MQ=255)
                                                                                                                                              gAAAAAGGGGAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaa                                                                                            <  2:84948‑M2/67‑48 (MQ=255)
                                                                                                                                              cgcttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGATTTTGTCTACAGCTGGCAACGTCtggtg         <  1:821775‑M1/143‑1 (MQ=255)
                                                                                                                                                 ttatGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGATTTTGTCTACAGCTGGCAACGTCTGGTGGAc      <  4:282694‑M1/146‑1 (MQ=255)
                                                                                                                                                     gggAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactggatacttcggcacgtaatgc  <  1:348720‑M2/150‑138 (MQ=255)
                                                                                                                                                     gggAGATTGTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactggatacttcggcacgtaatgc  <  2:451459‑M2/150‑138 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GAGCGGCACAGTACTGGCAGAGAAGCAGGAGCTGGTGCGCCACATTAAAGATGAGCCTGCGTCGCTGGATCCCGCTAAAGCCGTGGGCCTGCCAGAGATTCAGGTCATTCGCGATCTGTTTGAAGGTCTGGTGAATCAGAACGAAAAAGGGGAGATTGTCCCCGGCGTTGCGACTCAGTGGAAAAGTAATGACAACCGTATCTGGACTTTTACCCTGCGCGATAACGCAAAATGGGCGGATGGCACACCGGTAACGGCGCAAGATTTTGTCTACAGCTGGCAACGTCTGGTGGACCCAA  >  NC_000913_3_hsa_tpiA/1393304‑1393602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.