New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 78127753 (1.260)4 (0.130)
+TTATCCTTCACGCTTAACATCTGAGTTTGATGTTAAAAC		 4/208 4.4 10.1% intergenic (+55/‑92) lysY/lysZ tRNA‑Lys/tRNA‑Lys
?NC_000913_3_hsa_tpiA = 781652 45 (1.070)noncoding (76/76 nt) lysQ tRNA‑Lys
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTAAGCGTGAAGGATAACGTTGCGCCAGCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/781245‑781277
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGT  <  NC_000913_3_hsa_tpiA/781652‑781607
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TTAAGCGTGAAGGATAACGTTGCGCCAGCAACGTTATCCTTCACGCTTAACATCTGAGTTTGATGTTAAAACTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGT  <  1:473270/118‑1
TTAAGCGTGAAGGATAACGTTGCGCCAGCAACGTTATCCTTCACGCTTAACATCTGAGTTTGATGTTAAAACTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGT  >  2:473270/1‑118
               AACGTTGCGCCAGCAACGTTATCCTTCACGCTTAACATCTGAGTTTGATGTTAAAACTGGTGGGTCGTGCAGGATTCGAA                         <  1:650200/80‑1
               AACGTTGCGCCAGCAACGTTATCCTTCACGCTTAACATCTGAGTTTGATGTTAAAACTGGTGGGTCGTGCAGGATTCGAA                         >  2:650200/1‑80
                                 |||||||||||||||||||||||||||||||||||||||                                              
TTAAGCGTGAAGGATAACGTTGCGCCAGCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/781245‑781277
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGT  <  NC_000913_3_hsa_tpiA/781652‑781607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.