New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	4218462 =	NA (NA)	8 (0.120)	7/296	8.8	16.7%	noncoding (45/132 nt)	REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913_3_hsa_tpiA	4326130 =	40 (0.620)					noncoding (347/583 nt)	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/4218608‑4218462 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTGCCGGATGCG  >  NC_000913_3_hsa_tpiA/4326130‑4326142                                                                                                                                                                  GAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGGTT            >  3:347262/1‑150    CAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTCCGTTCGGCAACGGCTGTAGGCATGATAAGACGCGCAAGCGTCGCTTCAGGCATCCGTTGCC         >  2:528155/1‑150    CAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGGTTGCC         <  4:184530/150‑1     AATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGGTTGCCG        <  3:44792/150‑1     AATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGGTTGCCG        <  4:114804/150‑1       TCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGGTTGCCGGA      >  2:527402/1‑150         AATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGGTTGCCGGATG    >  3:212422/1‑150           TAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGGTTGCCGGATGCG  >  2:563247/1‑150                                                                                                                                                                  GAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/4218608‑4218462 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTGCCGGATGCG  >  NC_000913_3_hsa_tpiA/4326130‑4326142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.