mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 20.9% | 168.1 / 36.6 | 91 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 49 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1207790 = | 53 (0.880) | 8 (0.150) | 8/250 | 5.9 | 15.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 1209619 = | 42 (0.790) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3943845 = | 0 (0.000) | 8 (0.140) | 8/268 | 6.3 | 100% | noncoding (142/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | 4037656 = | NA (NA) | noncoding (138/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3943834 = | 0 (0.000) | 8 (0.140) | 8/268 | 6.3 | 100% | noncoding (131/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | 4037667 = | NA (NA) | noncoding (149/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3943834 = | 0 (0.000) | 8 (0.140) | 8/268 | 6.3 | 100% | noncoding (131/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | 3943852 = | 0 (0.000) | noncoding (149/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2729043 | NA (NA) | 8 (0.140) | 8/268 | 6.3 | NA | noncoding (142/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | = 2729047 | NA (NA) | noncoding (138/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 225889 = | 5 (0.080) | 8 (0.140) | 8/268 | 6.3 | 77.1% | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 3943852 = | 0 (0.000) | noncoding (149/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 225889 = | 5 (0.080) | 8 (0.140) | 8/268 | 6.3 | 62.7% | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | = 2729036 | NA (NA) | noncoding (149/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 154541 = | 63 (1.040) | 6 (0.110) | 6/266 | 7.2 | 9.3% | coding (886/2598 nt) | htrE | putative outer membrane usher protein |
| ? | NC_000913_3_hsa_tpiA | 154564 = | 57 (1.000) | coding (863/2598 nt) | htrE | putative outer membrane usher protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2726200 = | NA (NA) | 8 (0.140) | 6/270 | 7.3 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 228744 | 36 (0.600) | 8 (0.140) | 6/270 | 7.3 | 18.8% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||