New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 961051	52 (1.060)	5 (0.110)	5/262	5.9	9.0%	intergenic (+23/‑150)	ycaL/cmk	putative peptidase‑related chaperone/cytidylate kinase
	?	NC_000913	= 961058	52 (1.130)					intergenic (+30/‑143)	ycaL/cmk	putative peptidase‑related chaperone/cytidylate kinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCAGCTTTGAAACACTGGCTAGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGGAGATAAAGATG  >  NC_000913/960910‑961203                                                                                                                                                     |                                                                                                                                                  gCAGCTTTGAAACACTGGCTAGCCTGGATGCCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGAGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTg                                                                                                                                                   <  1:294880/149‑1 (MQ=255)   aGCTTTGAAACACTGGCTAGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGTGCTGGCCTTATGcc                                                                                                                                                 >  2:412461/1‑149 (MQ=255)    gCTTTGAAACGCTGGCTGGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATTAACAGAGCGTGCGCAACACATCCGTGATCGTATCGTCTCTGGTAAGTAAATCATTGTCATTTTTCGGGCTGGTCTTCTGCCa                                                                                                                                                <  2:165539/149‑1 (MQ=255)      tttGAAACACTGGCTAGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTTTGCCAGc                                                                                                                                              >  1:468465/1‑149 (MQ=255)      tttGAAACACTGGCTAGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGc                                                                                                                                              >  1:536008/1‑149 (MQ=255)           aaCCCTGGCCAGCCTGGATGGCGGTCCCACCCACTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTCGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCt                                                                                                                                         <  2:512826/149‑1 (MQ=255)            acacTGGCTAGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCta                                                                                                                                        >  1:797486/1‑149 (MQ=255)               cTGGCTAGCCTGGATGGCGGTCGCACCCACTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATaa                                                                                                                                     >  1:644163/1‑149 (MQ=255)                         tGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATa                                                                                                                           >  1:511918/1‑149 (MQ=255)                             tGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATc                                                                                                                       >  2:803284/1‑149 (MQ=255)                                 ggTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCa                                                                                                                   >  1:843505/1‑149 (MQ=255)                                       aCCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGaa                                                                                                             >  2:606141/1‑149 (MQ=255)                                       aCCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGCCTGGCCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGaa                                                                                                             >  1:259470/1‑149 (MQ=255)                                       aCCCAGGTCATGTTTGCCTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGaa                                                                                                             <  2:843505/149‑1 (MQ=255)                                         ccAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCCTCTTTCGGGCTGGTCTTCTGCCAGCCCCCTATAATTGCGCAATAAATCCCCATCTGGATa                                                                                                           >  1:326706/1‑149 (MQ=255)                                         ccAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGAAATAAATCCCCATCTGAATa                                                                                                           >  2:681524/1‑149 (MQ=255)                                         ccAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCAGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATCAATCCCCATGTGAATa                                                                                                           >  1:326834/1‑149 (MQ=255)                                           tgttcATGTATGCCTCTCCCCCACCATCAACGGTGCTTGCGCTACTCATCCGGTATCCTATCGGCTCTGGTAAGGAAATCATTGTCATCTTTCGGGCTGTTCTTCTGCCAGCCCGTTATAATTGCGCAATAAATCCCCATCTGAATACa                                                                                                         <  2:94529/145‑1 (MQ=255)                                                    ttGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCTCAATAAATCCCCATCTGAATACAGACAAAACt                                                                                                <  1:210478/149‑1 (MQ=255)                                                           tcACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGGCCACCCGCTCTACTTGCGGCATAAATCACCATCTGAATACAGACAAACATGGttttt                                                                                         >  1:309904/1‑149 (MQ=255)                                                           tcACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGttttt                                                                                         >  1:802761/1‑149 (MQ=255)                                                           tcACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGttttt                                                                                         >  1:450206/1‑149 (MQ=255)                                                           tcACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGttttt                                                                                         >  1:516353/1‑149 (MQ=255)                                                            cacccaccATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTg                                                                                        <  2:516353/149‑1 (MQ=255)                                                              cccaccATCAACAGAGCGTGCGCAACACATCCGTGATCGTAACGCCTCGGGTAAGCAAATCATAGTCATCTTCCGTGCTCGTCTTCTGCCCGCACACCCTAATTGCCACATAAACCCCCATCCGAATACAGACAACACCGGCTCTTGca                                                                                      >  2:740/1‑149 (MQ=255)                                                                caccaTCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGccca                                                                                    >  2:12504/1‑149 (MQ=255)                                                                   caTCAACAGAGCGTGCGCACCACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACaa                                                                                 <  2:665602/149‑1 (MQ=255)                                                                   caTCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAACCTGGTTTTTGCACACaa                                                                                 >  2:268326/1‑149 (MQ=255)                                                                    aTCAACAGAGGTGGAGCAACTCATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGTGCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATGCATACAAAACTGGTTTTTGCACACAAc                                                                                <  2:847528/149‑1 (MQ=255)                                                                        aCAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACCTTa                                                                            >  2:306841/1‑149 (MQ=255)                                                                         gcgagCGTGCGTGACACATCCGGGTTCGTATCGCCTTGGGGAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTaa                                                                           <  2:39422/147‑1 (MQ=255)                                                                          agagCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAAc                                                                          <  1:306841/149‑1 (MQ=255)                                                                            agCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGa                                                                        <  2:643900/149‑1 (MQ=255)                                                                                   gcAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTCACGATTTGTgg                                                                 >  2:722344/1‑149 (MQ=255)                                                                                    cAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGc                                                                <  1:27730/149‑1 (MQ=255)                                                                                         caTCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCgg                                                           <  2:802761/149‑1 (MQ=255)                                                                                                          ccTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCACTTAATCCCCATCTGAATCCAGACAAAACTGGTTTTTGCACACAACGTTAACAATTTGTGCAGTCGGCCGGCAAAATGcgcgcg                                          >  2:458863/1‑149 (MQ=255)                                                                                                               ggTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTAt                                     <  1:803284/149‑1 (MQ=255)                                                                                                                     taaATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAAtt                                                                                                                                   >  2:178568/1‑49 (MQ=255)                                                                                                                     taaATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAAtt                                                                                                                                   <  1:178568/49‑1 (MQ=255)                                                                                                                      aaaTCATTGTCATCTTTCGGGCTAGTCTTCTGGCAGCCCGCTGTAGTTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTAGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAAcc                              >  1:685100/1‑148 (MQ=255)                                                                                                                         tCATTGTCATCTTTCGGGCTGGTCTTTTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTa                           <  2:468465/149‑1 (MQ=255)                                                                                                                               tCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTg                     >  1:719149/1‑149 (MQ=255)                                                                                                                                    tttCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTa                >  2:347130/1‑149 (MQ=255)                                                                                                                                     ttCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTaa               <  2:450206/149‑1 (MQ=255)                                                                                                                                      tCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAg              <  1:129999/149‑1 (MQ=255)                                                                                                                                      gcGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTTGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAg              <  1:659305/148‑1 (MQ=255)                                                                                                                                        tggCTGGTCTTCGGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGga            <  1:69254/148‑1 (MQ=255)                                                                                                                                         ggCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGgag           <  1:268326/149‑1 (MQ=255)                                                                                                                                             ggTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGGAGATaa       >  2:80213/1‑149 (MQ=255)                                                                                                                                              gTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGGATATaaa      >  1:782398/1‑149 (MQ=255)                                                                                                                                                cttctGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGGGGATAAAGa    >  1:192608/1‑149 (MQ=255)                                                                                                                                                cttctGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGGAGATAAAGa    >  2:662128/1‑149 (MQ=255)                                                                                                                                                 ttctGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGGAGATAAAGAt   >  1:460297/1‑149 (MQ=255)                                                                                                                                                  tctGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAGAACTGGTTTTTGCACACAACGTTAACGATATGTGGCGTCGGCGCGTATCATGCGCGCGGTTATGTTAACGGTACGCCTTTTTGAAGGAGCTAAAGagg  >  1:498057/1‑147 (MQ=255)                                                                                                                                                  tctGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGGAGATAAAGATg  <  1:274167/149‑1 (MQ=255)                                                                                                                                                  tctGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGGAGATAAAGATg  >  1:498165/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GCAGCTTTGAAACACTGGCTAGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGGAGATAAAGATG  >  NC_000913/960910‑961203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.