| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1343551 = | 48 (0.990) | 4 (0.090) | 4/266 | 6.6 | 8.2% | intergenic (‑223/+46) | osmB/yciT | osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family |
| ? | NC_000913_3_pae_tpiA | 1343581 = | 46 (1.030) | intergenic (‑253/+16) | osmB/yciT | osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATCGGTCCCGTTGAGCGATTCAATCGCGTGATTACCGATTCGAAAATACGCGCCAGCGATCTGATGCATCTTGAGCACAGTAAACTCACCATTCACGTCGTTGACATTTAACCATTTCCCTTCTCTACGGATGATTTGCAGTTTGGCAAATCATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/1343708‑1343551‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaaatcatccgTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGAGTATGAATGTAC > NC_000913_3_pae_tpiA/1343581‑1343722 CATCTGTCCCGTTGAGCGATTCAATCGCGTGATTACCGATTCGAAAATACGCGCCAGCGATCTGATGCATCTTGAGCACAGTAAACTCACCATTCACGTCGTTGACATTTAACCATTTCCCTTCTCTACGGATGATTTGCAGTTTGGCA < 1:104538/149‑1 CGGTCCCGGTGAGCGATTCAATCGCGTGATTGCTGATTCGAATATACGCGCGAGCTATCTGATGCACCTTGATCACAGCAAACTCACCATTCACTTCTTTTACATTTAACCATTTCCCTTCTCTACGGATGATTTGCAGTTTGGCAAAT < 2:287467/149‑1 CCGTTGAGCGATTCAATCGCGTGATTACCGATTCGAAAATACGCGCCAGCGATCTGATGCATCTTGAGCACAGTAAACTCACCATTCACGTCGTTGACATTTAACCATTTCCCTTCTCTACGGATGATTTGCAGTTTGGCAAATCGTCC > 2:194825/1‑149 ATTTAACCATTTCCCTTCTCTACGGATGATTTGCAGTTTGGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATC > 1:574482/1‑117 ATTTAACCATTTCCCTTCTCTACGGATGATTTGCAGTTTGGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATC < 2:574482/117‑1 GGATGATTTGCAGTTTGGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGA > 1:810526/1‑97 GGATGATTTGCAGTTTGGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGA < 2:810526/97‑1 gcgAATCATCGGGAGAGAAGGGAAACGGTTAAATGGCAACGACGGGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGAGTATGAA < 1:654413/146‑1 ATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGAGTATGAATGTA < 1:205834/149‑1 aCATTCGTAGAGAAGGGAAATGGTTAAATGTCAACGTCGTGAATGGTGATTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCTATTGAATCGCTCAACGGGACCGATGGAGTATGAATTTAC < 2:695985/148‑1 CATCGGTCCCGTTGAGCGATTCAATCGCGTGATTACCGATTCGAAAATACGCGCCAGCGATCTGATGCATCTTGAGCACAGTAAACTCACCATTCACGTCGTTGACATTTAACCATTTCCCTTCTCTACGGATGATTTGCAGTTTGGCAAATCATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/1343708‑1343551‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaaatcatccgTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGAGTATGAATGTAC > NC_000913_3_pae_tpiA/1343581‑1343722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |