| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 3732127 | 153 (1.640) | 22 (0.240) | 20/248 | 6.2 | 12.7% | intergenic (+4/‑74) | xylF/xylG | D‑xylose transporter subunit/D‑xylose ABC transporter dual domain ATPase |
| ? | NC_000913_3_pae_tpiA | = 3732154 | 152 (1.650) | intergenic (+31/‑47) | xylF/xylG | D‑xylose transporter subunit/D‑xylose ABC transporter dual domain ATPase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CACACTGAATAATGGCCTGAAAGATGTCCCCTCCCGCCTCCTGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/3732003‑3732127‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCACGCCCCCGCTCCGCGCTGGGGCGTAACGCTTACAGCTCGCTCTCTTTGTGGAATCCGTCTTTAATTACCGTATCTTTGATGTTGTTTTTATTCACATCGATCGGTGTCAGGAGGCGGGAGGGGAC < NC_000913_3_pae_tpiA/3732154‑3732028 CACACTGAATAATGGCCTGAAAGATGTCCCCTCCCGCCTCCTGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTTACGCCCCCGCTCCGCGCTGGGGCG < 1:300693/150‑1 ATGGCCTGAAAGATGTCCCCTCCCGCCTCCTGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTCACGCCCCCGCTCCGCGCTGGGGCGTAACGCTTACA < 3:516987/150‑1 ATGGCCTGAAAGATGTCCCCTCCCGCCTCCTGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTCACGCCCCCGCTCCGCGCTGGGGCGTAACGCTTACA < 3:516973/150‑1 GGCCTGAAAGATGTCCCCTCCCGCCTCCTGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTCACGCCCCCGCTCCGCGCTGGGGCGTAACGCTTACAGC > 2:37873/1‑150 TGAAAGATGTCCCCTCCCGCCTCCTGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTTACGCCCCCGCTCCGCGCTGG > 3:397557/1‑129 TGAAAGATGTCCCCTCCCGCCTCCTGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTTACGCCCCCGCTCCGCGCTGG < 4:397557/129‑1 CCCTCCCGCCTCCTGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTTACG‑CCCCGCTCCGCGCTGGGGCGT > 3:186553/1‑122 CCCTCCCGCCTCCTGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTTACG‑CCCCGCTCCGCGCTGGGGCGT < 4:186553/122‑1 CTCCCGCCTCCTGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTCACGCCCCCGCTCCGCGCTGGGGCGTAACGCTTACAGCTCGCTCTCTTTGTGGAA < 1:37873/150‑1 TGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTTACGCCCCCGCTCCGCGC < 2:338053/102‑1 TGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTTACGCCCCCGCTCCGCGC > 1:338053/1‑102 TGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTTACGCCCCCGCTCCGCGCTGGGGCGTAA > 3:73543/1‑97 TGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTTACGCCCCCGCTCCGCGCTGGGGCGTAA < 4:73543/97‑1 AGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTCACGCCCCCGCTCCGCGCTGGGGCGTAACGCTTACAGCTCGCTCTCTTTGT < 2:27443/86‑1 AGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGTCACGCCCCCGCTCCGCGCTGGGGCGTAACGCTTACAGCTCGCTCTCTTTGT > 1:27443/1‑86 TTCCACAAAGAGAGCGAGCTGTAAGCGTTACGCCCCCGCTCCGCGCTGGGGCGTAACGCTTACAG > 3:500607/1‑65 TTCCACAAAGAGAGCGAGCTGTAAGCGTTACGCCCCCGCTCCGCGCTGGGGCGTAACGCTTACAG < 4:500607/65‑1 ACAAAGAGCGCGCGCTGTAAGCGTTACG‑CCCCGCTCCGCGCTGGGGCGTAACGCTTACATCTCGCTCTCTTTGTGGAATCCGTCTTTAATTACCGTATCTTTGATGTTGTTTTTATTCACATCGATCGGTGTCAGGAGGCGGGAGGGGAC > 2:937494/1‑150 ACAAAGAGAGCGAGCTGTAAGCGTTACGCCCCCGCTCCGCGCTGGGGCGTAACGCT > 3:541060/1‑56 ACAAAGAGAGCGAGCTGTAAGCGTTACGCCCCCGCTCCGCGCTGGGGCGTAACGCT < 4:541060/56‑1 GCGTTACGCCCCCGCTCCGCGCTGGGGCGTAACGCTTACAGCTCGCTC < 2:741598/48‑1 GCGTTACGCCCCCGCTCCGCGCTGGGGCGTAACGCTTACAGCTCGCTC > 1:741598/1‑48 CACACTGAATAATGGCCTGAAAGATGTCCCCTCCCGCCTCCTGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAATTAAAGACGGATTCCACAAAGAGAGCGAGCTGTAAGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/3732003‑3732127‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCACGCCCCCGCTCCGCGCTGGGGCGTAACGCTTACAGCTCGCTCTCTTTGTGGAATCCGTCTTTAATTACCGTATCTTTGATGTTGTTTTTATTCACATCGATCGGTGTCAGGAGGCGGGAGGGGAC < NC_000913_3_pae_tpiA/3732154‑3732028 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |