New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	4040817 =	NA (NA)	6 (0.420)	4/228	1.4	NA	intergenic (+181/+89)	rrfA/mobB	5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
	?	NC_000913_3_pae_tpiA	4040841 =	NA (NA)					intergenic (+205/+65)	rrfA/mobB	5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B

GGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTA  >  NC_000913_3_pae_tpiA/4040669‑4040966                                                                                                                                                     |                                                                                                                                                      ttgatgtcgcagtactggatattaatgatgttgaggggctggctgattttgtggtggagtggatgcaaaagcagaacggataagcaagagtaggctggataagacgcgccagcgtcgcatccggcatttttttctgcgccaatgcaaaaa                                                                                                                                                      <  2:59250‑M1/2‑1 (MQ=255)  tgatgtcgcattactggatattaatgatgttgaggggctggctgattttgtggtggagtggatgcaaaagcagaacggataagcaagagtaggctggataagacgcgccagcgtcgcatccggcatttttttctgcgccaatgcaaaAAg                                                                                                                                                     >  1:124580‑M1/148‑150 (MQ=255)  tgatgtcgcattactggatattaatgatgttgaggggctggctgattttgtggtggagtggatgcaaaagcagaacggataagcaagagtaggctggataagacgcgccagcgtcgcatccggcatttttttctgcgccaatgcaaaAAg                                                                                                                                                     >  1:188657‑M1/148‑150 (MQ=255)                             gTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCa                                                                                                                          <  4:19577/150‑1 (MQ=11)                                 aCGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTgg                                                                                                                      <  4:76132/150‑1 (MQ=33)                                  cGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAATCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGgc                                                                                                                     <  1:87141/150‑1 (MQ=21)                                              tAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAAt                                                                                                         >  3:79612/1‑150 (MQ=255)                                                ggACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGc                                                                                                       >  2:42685/1‑150 (MQ=255)                                                                    gATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCCTAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGt                                                                                   <  2:120150/150‑1 (MQ=255)                                                                    gATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGgcgc                                                                                                                   >  1:187395/1‑118 (MQ=38)                                                                    gATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGgcgc                                                                                                                   <  2:187395/118‑1 (MQ=38)                                                                         gAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTAt                                                                              >  2:90922/1‑150 (MQ=255)                                                                           aacggataagcaagagtaggctggataagacgcgccagcgtcgcatccggcatttttttctgcgccaatgcaaaAAGGCCATCCTGACGGATGGCCTTTTTGCAt                                                                                                                         >  2:70809‑M1/75‑105 (MQ=255)                                                                           aacggataagcaagagtaggctggataagacgcgccagcgtcgcatccggcatttttttctgcgccaatgcaaaAAGGCCATCCTGACGGATGGCCTTTTTGCAt                                                                                                                         <  1:70809‑M1/31‑1 (MQ=255)                                                                             gTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAg                                                                          <  2:7390/150‑1 (MQ=255)                                                                             gTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAg                                                                          <  3:71997/150‑1 (MQ=255)                                                                                 cGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaaaaa                                                                                                           <  4:62079/113‑1 (MQ=255)                                                                                 cGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaaaaa                                                                                                           >  3:62079/1‑113 (MQ=255)                                                                                    gcaagagtaggctggataagacgcgccagcgtcgcatccggcatttttttctgcgccaatgcaaaAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGAc                                                                                             <  4:44382‑M1/59‑1 (MQ=255)                                                                                    gcaagagtaggctggataagacgcgccagcgtcgcatccggcatttttttctgcgccaatgcaaaAAGGCCATCCTGACGGAGGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGAc                                                                                             >  3:44382‑M1/66‑124 (MQ=255)                                                                                         cGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGcc                                                                        >  2:174350/1‑140 (MQ=255)                                                                                         cGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGcc                                                                        <  1:174350/140‑1 (MQ=255)                                                                                               ggAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCg                                                        >  1:93371/1‑150 (MQ=255)                                                                                                        cGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTg                                                                                         >  3:83602/1‑108 (MQ=255)                                                                                                        cGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTg                                                                                         >  3:83607/1‑108 (MQ=255)                                                                                                        cGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTg                                                                                         <  4:83607/108‑1 (MQ=255)                                                                                                        cGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTg                                                                                         <  4:83602/108‑1 (MQ=255)                                                                                                        cGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCttt                                               <  2:182313/150‑1 (MQ=255)                                                                                                           gCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGc                                            <  3:17068/150‑1 (MQ=255)                                                                                                            cAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCa                                           >  3:108285/1‑150 (MQ=255)                                                                                                             gcagcgtcgcatcaggcatttttttctgcgccaatgcaaaAAGGCCATCCTGACgg                                                                                                                                        <  1:108352‑M1/16‑1 (MQ=255)                                                                                                             gcagcgtcgcatcaggcatttttttctgcgccaatgcaaaAAGGCCATCCTGACgg                                                                                                                                        >  2:108352‑M1/41‑56 (MQ=255)                                                                                                                    ccgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactcc                                   >  1:165950/1‑150 (MQ=255)                                                                                                                          tAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCt                                                              >  1:175737/1‑117 (MQ=255)                                                                                                                          tAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCt                                                              <  2:175737/117‑1 (MQ=255)                                                                                                                                gCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATca                       <  2:42507/150‑1 (MQ=255)                                                                                                                                   aGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactcc                                   <  2:20063/135‑1 (MQ=255)                                                                                                                                   aGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactcc                                   >  1:20063/1‑135 (MQ=255)                                                                                                                                       aTCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCagccagcc                >  3:56597/1‑150 (MQ=255)                                                                                                                                          aaaTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTc                                                                                  <  2:180289/81‑1 (MQ=255)                                                                                                                                          aaaTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTc                                                                                  >  1:180289/1‑81 (MQ=255)                                                                                                                                           aaTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTc            <  4:108285/150‑1 (MQ=255)                                                                                                                                               aaGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactc                                    >  2:80579/1‑122 (MQ=255)                                                                                                                                               aaGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactc                                    <  1:80579/122‑1 (MQ=255)                                                                                                                                                    gAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCAtt   <  1:42685/150‑1 (MQ=255)                                                                                                                                                     AAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTa  >  4:79612‑M1/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTA  >  NC_000913_3_pae_tpiA/4040669‑4040966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.