| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 2456281 = | 20 (1.290) | 4 (0.290) | 4/218 | 1.3 | 21.9% | intergenic (‑635/+46) | yfcV/sixA | putative fimbrial‑like adhesin protein/phosphohistidine phosphatase |
| ? | NC_000913_3_pae_tpiA | 2456318 = | 11 (0.800) | intergenic (‑672/+9) | yfcV/sixA | putative fimbrial‑like adhesin protein/phosphohistidine phosphatase | |||||
TTCATTTCAACATGTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGCGTT > NC_000913_3_pae_tpiA/2456139‑2456405 | ttCATTTCAACATGTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGc > 3:84927/1‑150 (MQ=255) ttatgtccgggcgaaacgccgcctatgtttaccacctcggccattgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGcc > 1:109392‑M1/142‑150 (MQ=255) tccgggcgaaacgccgcctatgtttaccacctcggccattgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATg < 1:36763‑M1/14‑1 (MQ=255) gTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAAtt > 3:5443/1‑133 (MQ=255) gTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAAtt < 4:5443/133‑1 (MQ=255) aaCTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCt > 2:164539/1‑150 (MQ=255) ttGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCAtt < 4:84927/150‑1 (MQ=255) gCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGGGCAATTATGcc < 1:148684/128‑1 (MQ=255) gCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGcc > 2:148684/1‑128 (MQ=255) cgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCtttt > 2:36763‑M1/92‑150 (MQ=255) aTGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCtt < 1:164539/150‑1 (MQ=255) gatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATGAATCTACCTCTTCGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCa > 4:17679‑M1/82‑150 (MQ=255) aaaGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTg < 1:98699/140‑1 (MQ=255) aaaGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTg > 2:98699/1‑140 (MQ=255) gtgtTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTg < 2:141212/109‑1 (MQ=255) gtgtTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTg > 1:141212/1‑109 (MQ=255) cgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAAtgtg > 4:27749‑M1/42‑142 (MQ=255) cgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAAtgtg < 3:27749‑M1/101‑1 (MQ=255) gATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGc > 1:29792/1‑71 (MQ=255) gATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGc < 2:29792/71‑1 (MQ=255) ggTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAg > 1:11937/1‑150 (MQ=255) gACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAg > 2:151602/1‑95 (MQ=255) gACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAg < 1:151602/95‑1 (MQ=255) gACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGCGtt < 2:11937/150‑1 (MQ=255) aCAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCg < 2:183168/134‑1 (MQ=255) aCAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCg > 1:183168/1‑134 (MQ=255) | TTCATTTCAACATGTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGCGTT > NC_000913_3_pae_tpiA/2456139‑2456405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |