| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 291400 | NA (NA) | 18 (1.170) | 16/246 | 0.2 | 90.1% | intergenic (‑54/‑4) | insA/yagJ | IS1 repressor TnpA/CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related |
| ? | NC_000913_3_pae_tpiA | 2490618 = | 2 (0.130) | coding (1333/1695 nt) | oxc | oxalyl CoA decarboxylase, ThDP‑dependent | |||||
CAGCGCCACTGAGATCAACACCGTCTCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCA > NC_000913_3_pae_tpiA/2490486‑2490766 | cAGCGCCACTGAGATCAACACCGTCTCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTAACCGGCAGGTTATATCGAC‑CAATCATTACAATTTCCATCCCACTGAAATAAAACGCACTATCACCTTCGATGGCGACggtattgt < 2:50650‑M2/150‑9 (MQ=255) tgcttttgccgttacgcaccaccccgtcagcagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGaa < 1:54000‑M2/26‑1 (MQ=255) tctcCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgtttt > 4:109776‑M2/1‑119 (MQ=255) gtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCAt > 3:115207‑M2/96‑150 (MQ=255) cgccATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcc < 2:151875‑M2/150‑48 (MQ=255) gccATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttatt > 2:53793‑M2/1‑102 (MQ=255) gccATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttatt < 1:53793‑M2/122‑21 (MQ=255) cATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttc > 1:39640‑M2/1‑100 (MQ=255) cATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttc < 2:39640‑M2/137‑38 (MQ=255) gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGAt < 4:11356‑M2/61‑1 (MQ=255) ttaAAAATAACGATCGTCACCGGCAGGTTATATCGAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgact < 1:24125‑M2/150‑56 (MQ=255) aaaaaTAACGATCGTCACCGGCAGGTTATATCGAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt > 4:21619‑M2/1‑93 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcggtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAg < 4:7093‑M2/50‑1 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcggtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAg > 3:7093‑M2/79‑128 (MQ=255) tCGTCACCGGCAGCTTAGAGTTCC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACGATCACCTTCAATGGCGACggtaatgactccgacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagct > 1:50650‑M2/1‑82 (MQ=255) tCGTCACCGGCAGAATACA‑CGCCGAAATCGTTTCAATTTCCATCCCACTGAAACCAAAATCACTATCACCGTCATTGCCGACggtattgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagct > 1:50648‑M2/1‑82 (MQ=255) atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGt > 3:48607‑M2/72‑150 (MQ=255) cACCGGCAGGTTATATCGAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGa > 4:72830/1‑77 (MQ=255) cACCGGCAGGTTATATCGAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGa < 3:72830/77‑1 (MQ=255) gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATa > 3:25605‑M2/69‑117 (MQ=255) gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATa < 4:25605‑M2/49‑1 (MQ=255) tCGAC‑AAATCGTTTCAATTTCCATCCCACTGAACCCAACAGCACTATCACCTTCAATGGCGCCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacga < 3:27119‑M2/150‑88 (MQ=255) tCGAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattg < 3:18027‑M2/84‑22 (MQ=255) tCGAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattg > 4:18027‑M2/1‑63 (MQ=255) gAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca < 2:91080‑M2/150‑90 (MQ=255) aac‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca > 4:87754‑M2/2‑61 (MQ=255) aTCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagc > 2:109941‑M2/1‑56 (MQ=255) aTCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagc < 1:109941‑M2/123‑68 (MQ=255) tCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgt > 1:91080‑M2/1‑50 (MQ=255) aaTTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcaga < 2:154885‑M2/88‑41 (MQ=255) aaTTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcaga > 1:154885‑M2/1‑48 (MQ=255) tcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCaa < 4:115207‑M2/117‑1 (MQ=255) actaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAatat > 3:19339‑M2/28‑150 (MQ=255) cACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccga < 2:58379‑M2/72‑51 (MQ=255) cACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccga > 1:58379‑M2/1‑22 (MQ=255) ggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAg < 4:19339‑M2/139‑1 (MQ=255) gcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAgg > 1:107927‑M2/11‑150 (MQ=255) catcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCAt > 2:123881‑M2/7‑73 (MQ=255) catcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCAt < 1:123881‑M2/67‑1 (MQ=255) catcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAatat < 1:10257‑M2/123‑1 (MQ=255) catcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAatat > 2:10257‑M2/7‑129 (MQ=255) catcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTAt > 1:35612‑M2/7‑150 (MQ=255) cacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTg > 1:51279‑M2/4‑150 (MQ=255) tCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgc > 1:151875‑M2/1‑11 (MQ=255) | CAGCGCCACTGAGATCAACACCGTCTCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGAC‑AAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCA > NC_000913_3_pae_tpiA/2490486‑2490766 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |