New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1269102 =	NA (NA)	5 (0.350)	5/230	1.2	29.3%	intergenic (+83/+66)	kdsA/ldrA	3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small
	?	NC_000913_3_pae_tpiA	1269110 =	13 (0.840)					intergenic (+91/+58)	kdsA/ldrA	3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small

ATGAAAGCGATTGATGATCTGGTGAAAGGTTTCGAAGAACTGGATACCAGCAAGTAATCTTTTTTGCTTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCC  >  NC_000913_3_pae_tpiA/1268963‑1269244                                                                                                                                                    |                                                                                                                                       ttctggcacgacctggcagcaccgatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgcccgaaaccggccgcaggggtaacagCCt                                                                                                                                      <  4:41637‑M2/3‑1 (MQ=255)      gcacgacctggcagcaccgatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgcccgaaaccggccgcaggggtaacagCCTGCGGc                                                                                                                                 >  4:24474‑M2/143‑150 (MQ=255)                              tttCGAAGAACTGGATACCAGCAAGTAATCTTTTTTTCTTGTAAAATAAACAATTAACGTTCTAAGTTAAGACTTTTTTCATGGGTGAAGGAAACAAAAAAGGCCGCAGACTGTTTCCCCTGCGTCCGGTTACGTGCGCATATTGCCATc                                                                                                         >  2:37167/1‑150 (MQ=255)                                    agaaCTGGATACCAGCAAGTAATCTTTTTTGCTTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCa                                                                                                   >  3:66528/1‑150 (MQ=255)                                            aTACCAGCAAGTAATCTTTTTTGCTTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACg                                                                                           <  2:108234/150‑1 (MQ=255)                                                     aGTAATCTTTTTTGCTTGAAAAATAAAGTATTATCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTc                                                                                  <  1:37167/150‑1 (MQ=255)                                                       tAATCTTTTTTGCTTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGtttt                                                                                   <  3:80871/147‑1 (MQ=255)                                                       tAATCTTTTTTGCTTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGtttt                                                                                   >  4:80871/1‑147 (MQ=255)                                                          tCTTTTTTTTTTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCtt                                                                             >  2:67098/1‑150 (MQ=255)                                                                                  aTTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGa                                                     <  4:66528/150‑1 (MQ=255)                                                                                            tGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGc                                           <  1:67098/150‑1 (MQ=255)                                                                                                ttAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGta                                       >  3:24474/1‑150 (MQ=255)                                                                                                 tAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGtaa                                      <  3:115423/150‑1 (MQ=255)                                                                                                   aGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACgg                                                                                                     >  3:105704/1‑85 (MQ=255)                                                                                                   aGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACgg                                                                                                     <  4:105704/85‑1 (MQ=255)                                                                                                                  aatatgcgcccgaaaccggccgcaggggtaacagCCTGCGGCCGGTTTCGGGCGCATAtt                                                                                                               >  3:88613‑M2/35‑60 (MQ=255)                                                                                                                  aatatgcgcccgaaaccggccgcaggggtaacagCCTGCGGCCGGTTTCGGGCGCATAtt                                                                                                               <  4:88613‑M2/26‑1 (MQ=255)                                                                                                                                     ccgcaggggtaacagCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCCTGcc  >  4:113481‑M2/16‑150 (MQ=255)                                                                                                                                          ggggtaacagCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGc                                                                                                 <  2:145992‑M2/40‑1 (MQ=255)                                                                                                                                          ggggtaacagCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGc                                                                                                 >  1:145992‑M2/11‑50 (MQ=255)                                                                                                                                                    |                                                                                                                                       ATGAAAGCGATTGATGATCTGGTGAAAGGTTTCGAAGAACTGGATACCAGCAAGTAATCTTTTTTGCTTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCC  >  NC_000913_3_pae_tpiA/1268963‑1269244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.