mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 23.3% | 442.2 / 133.4 | 219 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 850 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1207805 | 133 (0.840) | 34 (0.250) | 32/222 | 8.6 | 24.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | = 1209602 | 91 (0.660) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4542606 | 129 (0.810) | 34 (0.230) | 30/236 | 10.1 | 22.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | = 4542902 | 113 (0.770) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3423389 | 206 (1.300) | 50 (0.350) | 27/226 | 10.5 | 21.2% | intergenic (+195/+34) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | = 3423405 | 189 (1.340) | intergenic (+211/+18) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 225281 | NA (NA) | 42 (0.280) | 30/244 | 10.5 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 225685 | 153 (0.970) | 32 (0.210) | 27/242 | 11.4 | 18.0% | intergenic (+110/‑74) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | 3426842 = | NA (NA) | intergenic (‑59/+116) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala | |||||
| * | ? | NC_000913_3_pae_tpiA | 3427078 = | NA (NA) | 33 (0.220) | 24/236 | 12.2 | 81.6% | noncoding (75/77 nt) | ileU | tRNA‑Ile |
| ? | NC_000913_3_pae_tpiA | = 4037236 | 8 (0.050) | intergenic (+19/‑24) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913_3_pae_tpiA | = 225464 | NA (NA) | 33 (0.220) | 24/236 | 12.2 | NA | intergenic (+7/‑36) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913_3_pae_tpiA | = 225467 | NA (NA) | intergenic (+10/‑33) | ileV/alaV | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913_3_pae_tpiA | 4137814 = | 350 (2.210) | 33 (0.230) | 23/232 | 12.3 | 9.5% | intergenic (‑241/+34) | yijF/gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| ? | NC_000913_3_pae_tpiA | 4137841 = | 311 (2.150) | intergenic (‑268/+7) | yijF/gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3648127 | 153 (0.970) | 29 (0.200) | 23/232 | 12.3 | 17.5% | noncoding (65/84 nt) | agrA | inactive antisense sRNA |
| ? | NC_000913_3_pae_tpiA | = 3648132 | 133 (0.920) | noncoding (70/84 nt) | agrA | inactive antisense sRNA | |||||
| * | ? | NC_000913_3_pae_tpiA | 1207790 = | 147 (0.930) | 22 (0.160) | 21/222 | 12.5 | 16.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1209619 = | 93 (0.670) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||