| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 4135948 | 255 (1.960) | 24 (0.200) | 19/238 | 11.0 | 9.4% | intergenic (+17/‑76) | katG/yijE | catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein |
| ? | NC_000913_3_pae_tpiA | = 4135964 | 223 (1.850) | intergenic (+33/‑60) | katG/yijE | catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/4135794‑4135948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcagcgACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACGAAGTCTTTAACAAACTTCTCGTGGGCATCGCTACTGGCGTAAACTTCCGCCACCGCACGCAGG < NC_000913_3_pae_tpiA/4135964‑4135817 CTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTT < 4:953229/150‑1CTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTT > 2:1413609/1‑150 TGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTGGACCTGCTGTAATCTGACCCCGTTC < 1:508157/150‑1 GGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCA > 2:849165/1‑150 GGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCA > 1:59785/1‑150 GTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAG < 1:1387206/150‑1 TTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCA > 1:643444/1‑146 TTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCA > 1:643275/1‑146 TTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCA < 2:643275/146‑1 TTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCA < 2:643444/146‑1 GGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTG > 1:762787/1‑150 TCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGC < 1:158002/150‑1 TCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCC > 1:981007/1‑150 CTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGC < 3:138729/150‑1 CTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGC < 1:604512/150‑1 TGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGCT < 1:1304109/150‑1 TGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTATAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGCT < 2:981007/150‑1 GTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCA > 1:270042/1‑124 GTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCA < 2:270042/124‑1 GGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCACGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGG > 1:1280059/1‑150 GTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGT > 3:960151/1‑116 GTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGT < 4:960151/116‑1 TGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCACGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGT < 2:1280059/150‑1 CGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTAC > 2:4719/1‑136 CGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTAC < 1:4719/136‑1 GAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGC > 1:1298731/1‑88 GAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGC < 2:1298731/88‑1 GTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCG > 4:804287/1‑130 GTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCG < 3:804287/130‑1 TTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGC > 3:504709/1‑102 TTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGC < 4:504709/102‑1 AGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGG < 1:210343/118‑1 AGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGG > 2:210343/1‑118 TGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCACGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCG > 1:523854/1‑101 TGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCACGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCG < 2:523854/101‑1 AAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTC < 2:1510211/114‑1 AAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTC > 1:1510211/1‑114 CGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGC > 2:313231/1‑58 CGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGACTGCCAGCAAGCAGCCGC < 1:313231/58‑1 CCCGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACGAAGTCTTTAACAAACTTCTCGTGGGCATCGCTACTGGCGTAAACTTCCGCCACC > 3:518194/1‑150 GTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACGAAGTCTTTAACAAACTTCTCGT < 2:282319/115‑1 GTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACGAAGTCTTTAACAAACTTCTCGT > 1:282319/1‑115 GTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTC > 4:356967/1‑78 GTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTC < 3:356967/78‑1 GTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGT < 1:791808/67‑1 GTTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGT > 2:791808/1‑67 TTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACGAAGTCTTTAACAAACTTCTCGTGGGCATCGCTACTGGCGTAAACTTCCGCCACCGCAC < 1:1184744/150‑1 TTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCA > 2:779302/1‑48 TTCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCA < 1:779302/48‑1 TCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACGAAGTCTTTAACAAACTTCTCGTGGGCATCGCTACTGGCGTAAACTTCCGCCACCGCACG > 2:1075864/1‑150 TCAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACGAAGTCTTTAACAAACTTCTCGTGGGCATCGCTACTGGCGTAAACTTCCGCCACCGCACG > 4:709221/1‑150 CAGCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACGAAGTCTTTAACAAACTTCTCGTGGGCATCGCTACTGGCGTAAACTTCCGCCACCGCACGC < 1:523424/150‑1 GCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACGAAGTCTTTAACAAACTTCTCTTGGGCATCGCTACTGGCGTAAACTTCCGCCACCGCACGCAG < 1:48590/150‑1 GCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACGAAGTCTTTAACAAACTTCTCGTGG > 1:1048935/1‑112 GCGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACGAAGTCTTTAACAAACTTCTCGTGG < 2:1048935/112‑1 CGACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACGAAGTCTTTAACAAACTTCTCGTGGGCATCGCTACTGGCGTAAACTTCCGCCACCGCACGCAGG > 1:1413019/1‑150 GACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACG < 1:1496232/86‑1 GACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACG > 2:1496232/1‑86 CTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/4135794‑4135948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcagcgACTGCCAGCAAGCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAACGGTCGAGGTTCATCACTTTCACCCATGCCGCCACGAAGTCTTTAACAAACTTCTCGTGGGCATCGCTACTGGCGTAAACTTCCGCCACCGCACGCAGG < NC_000913_3_pae_tpiA/4135964‑4135817 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |