| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 2472316 = | 36 (1.220) | 4 (0.140) | 4/280 | 3.6 | 10.2% | pseudogene (72/270 nt) | yfdM | CPS‑53 (KpLE1) prophage; putative methyltransferase;Phage or Prophage Related |
| ? | NC_000913_3_pae_tpiA | 2472340 = | 36 (1.260) | pseudogene (48/270 nt) | yfdM | CPS‑53 (KpLE1) prophage; putative methyltransferase;Phage or Prophage Related | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCAGTCATGCGCCAGCGCGTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGT > NC_000913_3_pae_tpiA/2472172‑2472456 | ccAGTCATGCGCCAGCGCGTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCa < 2:42736/149‑1 (MQ=255) tCATGCGCCAGCGCGTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATAAGTAAACAGATCAGGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAGATGTTGTCCGGCTTGCGCCAATGGTTGACGActtc > 1:305899/1‑149 (MQ=255) tGCGCCAGCGCGTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATAGCCCActtcctt > 1:226241/1‑149 (MQ=255) cAGCGCGTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCGGtt > 2:416108/1‑149 (MQ=255) cTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAACATGATGTCTGTCGTGTGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGt > 1:432656/1‑149 (MQ=255) ccGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTg < 1:258313/149‑1 (MQ=255) cGCAGTGTAAGACGGGGCATATGTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGttact < 2:483363/149‑4 (MQ=255) gaGTGTAATAGGCGGCACATTTGGCGGTATCACCATCAGTAAACAGATCCAGGACAAACGGGCCAAACAGGGGGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGACCACTTCCTTCAGGTCATGGGCTGGTTTGTTc < 2:340361/148‑1 (MQ=255) cAGTGTAATACGCGGCACATTTGGCTTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGAGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTc < 1:472252/149‑1 (MQ=255) tgtAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGc > 1:42008/1‑149 (MQ=255) cgGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTccacc > 1:288244/1‑149 (MQ=255) acaTTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAccg > 2:366275/1‑149 (MQ=255) ttGGCCTCATCACCATCAGTAAACAGACCCAGATCAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTg < 1:2693/149‑1 (MQ=255) gTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAat > 1:162727/1‑149 (MQ=255) aCCATCTGCAAACAGATCCAGAACACACGGGCCAAGAAGGGTGTTAATTCCACAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAAtatttat < 1:236545/149‑1 (MQ=255) cATCAGTAAACAGATCCAGAACAAACGGGCCAAACACGGTGTTTAAACTCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATttatta < 1:432820/149‑1 (MQ=255) aGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATCTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCa < 1:450400/149‑1 (MQ=255) aaCAGATCCAGAACAAACGTGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTaa < 1:29459/149‑1 (MQ=255) gccAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCGGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGccccc > 2:462407/2‑149 (MQ=255) aaaCGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCCCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCCCGTAAtt > 2:174407/1‑149 (MQ=255) cGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTccc < 1:153050/149‑1 (MQ=255) cAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGGTCGCCCAATTCCTTCAGTTCATGGGCTGGTTTGTTCCGAAGCTCCACCAGCGCCCGGCAATATTTATTAATCATTAAGCCCCCACGTAATTACCTgcga > 2:70325/1‑149 (MQ=255) aCAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGAt < 1:424887/149‑1 (MQ=255) aGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCATTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTaa < 1:397040/122‑1 (MQ=255) aGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTaa > 2:397040/1‑122 (MQ=255) acttCCCCAGAAAATGTTGTCCGGCGTGCGCTACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTc < 1:60149/147‑1 (MQ=255) ccAGAACATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCGTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGa < 2:279696/149‑1 (MQ=255) ccAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACGTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCTCTGAGAGATACCACTCTTCACCTGa < 1:397816/149‑1 (MQ=255) cataaaaGGTTGTCCGGCCTGCGCCTCTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGAt < 1:214890/146‑1 (MQ=255) aaaTGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCCCCCGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCACTGAGAGATACCACTCTTCACCTGATGCAg > 2:457923/1‑149 (MQ=255) tgttgtCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGccc > 2:394568/1‑149 (MQ=255) ggCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTAATGCAGCCCGCTTACTg > 1:106815/1‑149 (MQ=255) ggCGTGCGCCACTGATCGCCCACTTCCCTCACTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTg < 1:487812/149‑1 (MQ=255) gcCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGCTACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTcc > 1:422709/1‑149 (MQ=255) cACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGt > 2:518802/1‑149 (MQ=255) cACTGATCGCCCACTTCCTTCAGTTCATGAGCTGGTTTGTTCCGGAGCTCGACCAGCGCCTTGCAATATTAATTACTCATTAAGCCACCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATACAGCCCGCTTACTGCTTTGCCGt > 1:441873/1‑149 (MQ=255) | CCAGTCATGCGCCAGCGCGTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGGCAATATTTATTACTCATTAAGCCCCCACGTAATTCCCTGAGAGATACCACTCTTCACCTGATGCAGCCCGCTTACTGCTTTTCCGT > NC_000913_3_pae_tpiA/2472172‑2472456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |