New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3700152	36 (1.220)	4 (0.140)	4/288	3.7	10.6%	noncoding (17/66 nt)	rdlD	sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR‑D repeat, with toxic peptide LdrD
	?	NC_000913_3_pae_tpiA	= 3700196	32 (1.090)					noncoding (61/66 nt)	rdlD	sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR‑D repeat, with toxic peptide LdrD
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCATACTGGCAAGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTAC  >  NC_000913_3_pae_tpiA/3700008‑3700299                                                                                                                                                 |                                                                                                                                                    aTCATACTGGCAAGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGGCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACATTACGCGGCTATTCTTGGGTGGTCTCGAGTCAAGATTAAccc                                                                                                                                                 >  2:119334/1‑149 (MQ=255)     tACTGGCAAGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCCAGATTAACCCCCgt                                                                                                                                             >  2:27757/1‑149 (MQ=255)               aaTGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCa                                                                                                                                   <  1:5490/149‑1 (MQ=255)                aTGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAg                                                                                                                                  <  2:513420/149‑1 (MQ=255)                   ccAGCAATTACCGGAGCCGCTAAATCATGCTAGATGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTg                                                                                                                               <  1:171131/149‑1 (MQ=255)                    cAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTga                                                                                                                              >  1:6331/1‑148 (MQ=255)                    cAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATCCCCAGCTCTACGAACGTCATATAGCCGCCTCTGCTGTAATGACAACGTTTCGCGGCTATCCTTGACTGGTCTCCAGTCAAGTCTAGCCCCCGCGGTATCGTCAgctcc                                                                                                                              >  2:211792/1‑145 (MQ=255)                       cAATGACCGGAGCCGCTAAATCATTGCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATa                                                                                                                           <  1:300443/149‑1 (MQ=255)                       cAATGACCGGAGCCGCTAAATCATGCCAGAAGGTCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATa                                                                                                                           >  1:490759/1‑149 (MQ=255)                         aTGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATAcc                                                                                                                         <  1:375210/149‑1 (MQ=255)                              cGGAGCCGCTAAATCATGCCAGAAGGGCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCaa                                                                                                                    <  2:259822/149‑1 (MQ=255)                              cGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGtgtt                                                                                                                                       >  2:333219/1‑130 (MQ=255)                              cGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGtgtt                                                                                                                                       <  1:333219/130‑1 (MQ=255)                              cGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCaa                                                                                                                    >  1:78080/1‑149 (MQ=255)                                     ccTACATCATGCCAGAAGGCAATGCCCAGCTCTGCGAACGTCATCGAGCGGCCTGTGGTGTAATGACAACGTCTCCCGGATATTCTTGAGCGGTCTACAGTCCAGATTAGCCCCAGTGATGTTGTCAGCTGCATACCTCTAACGAGCgg                                                                                                             >  2:396696/2‑149 (MQ=255)                                      cTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTCCATACCTGCAACGTGCggg                                                                                                            >  2:195350/1‑149 (MQ=255)                                         aaTCAGGCCAGACTGCCATGCCCAGCTCGGCGAACGGCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGt                                                                                                         <  1:188918/149‑1 (MQ=255)                                             aTGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGCGCCCCTTGCGTCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTtc                                                                                                     >  1:361094/1‑149 (MQ=255)                                             aTGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTtc                                                                                                     >  1:245723/1‑149 (MQ=255)                                                 cAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTtctctc                                                                                                 >  1:440889/1‑149 (MQ=255)                                                   gAAGGGCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACTACGTTTCGCGGCTATTCTTGAGTGGGCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTtctctctc                                                                                               <  1:180498/149‑1 (MQ=255)                                                        ccATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCa                                                                                          >  1:451975/1‑149 (MQ=255)                                                                aGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGc                                                                                  <  1:164541/149‑1 (MQ=255)                                                                 gCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGcc                                                                                 >  2:159365/1‑149 (MQ=255)                                                                      gCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAg                                                                            <  2:45493/149‑1 (MQ=255)                                                                               atatAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGc                                                                   >  1:170825/1‑149 (MQ=255)                                                                                          tctgcagtAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGACACCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGCTCTTATCTCTCCAGCAACCACCGCCAACCGGACATATGCCCCCGCAACAt                                                        >  2:499032/7‑149 (MQ=255)                                                                                              ttgtAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTtcg                                                    <  2:296726/149‑1 (MQ=255)                                                                                              ttgtAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTgcg                                                    >  2:465791/1‑149 (MQ=255)                                                                                                               cgcgGCTATTCTTGAGTGGGCTAGAGTCAAGATTAGCGCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCATCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTc                                   <  1:341629/149‑1 (MQ=255)                                                                                                                   gCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGc                               >  2:87589/1‑149 (MQ=255)                                                                                                                         cTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGAGTTTTCCCTCTCCAGCAACCAATGCCACCGGGGATAAAGCCCCCGCAACATTGCGCCTCACCCGACCCTTTCCGGCTTGCCg                         >  2:10056/1‑149 (MQ=25)                                                                                                                               tGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTAGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGAtt                   >  2:505499/1‑149 (MQ=255)                                                                                                                                  gcTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTa                <  1:243273/148‑1 (MQ=255)                                                                                                                                     agagTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCCCCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGa             <  2:366086/149‑1 (MQ=255)                                                                                                                                         tCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCAGGATTGCGGCTGATTCTACGATTGc         >  1:68097/1‑149 (MQ=255)                                                                                                                                           aaGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACAAATGCCACCAGGGATAAAGCCCCCGCAACATTACGCCTCACCGGAACCTTTCCGGCTTGCCGCTGAGTCTACGATTGCtt       >  2:180871/1‑149 (MQ=255)                                                                                                                                                tAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTAAc  <  2:222484/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    ATCATACTGGCAAGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTAC  >  NC_000913_3_pae_tpiA/3700008‑3700299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.