| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1978503 = | NA (NA) | 25 (0.850) | 22/290 | 0.4 | 96.2% | intergenic (‑306/+15) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913_3_pae_tpiA | = 2490627 | 1 (0.030) | coding (1324/1695 nt) | oxc | oxalyl CoA decarboxylase, ThDP‑dependent | |||||
CCAGCGCCACTGAGATCAACACCGTCTCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTA > NC_000913_3_pae_tpiA/2490485‑2490775 | ccAGCGCCACTGAGACCAACACCGTCTCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaat > 1:519441‑M2/1‑143 (MQ=255)ccAACGCCACTGAGATTAAAATCGTCTCCTCCGTAGGTGCCGCCATTAATAAAAATAACGAGAGTCACCGGCAGTGTAGATCGACAAATCGTTTCAATTTCCATCCCATTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaat > 2:170657‑M2/1‑143 (MQ=255) tccgggggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcataccctaaatcagtaagttggcagcatcacCAATGGCGACAACCGga < 1:30768‑M2/17‑1 (MQ=255) tccggcggtgctgttgccgttacgtaccaccccgtcagtagctgaaaggagggaacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGga < 1:15142‑M2/17‑1 (MQ=255) cACTGAGATCAACACCGTCTCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGACACCGGCAGGCTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactcca < 1:325499‑M2/149‑14 (MQ=255) aatgaAATCAACATCGTTTCCTCTGTAGATGCCTCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaa > 2:431222‑M2/3‑135 (MQ=255) tGAGATCAACACCGTCTCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACgggaatgactccaaca < 1:390046‑M2/149‑17 (MQ=255) gcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGaa < 1:221178‑M2/26‑1 (MQ=255) gagaTCAACTCCGTCTCCTCTGTATGTGGCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaactt > 2:238432‑M2/1‑132 (MQ=255) aTCAACACCGTATCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATCTAGACAAATCGTTTCAATTTCCATCCAACTGAAACCAAAAGCACTATAAACTTCCATGGCAACggtaataactccaactcatt < 2:251226‑M2/149‑21 (MQ=255) tCAACACCGTCTCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCCATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCCATCGCGACcgtaatgactccaacctattg < 1:241571‑M2/149‑22 (MQ=255) ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactgcagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGc < 1:384146‑M2/33‑1 (MQ=255) cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCt > 1:241122‑M2/116‑149 (MQ=255) gcacgaccccgtcattagctgaagaggaggtacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCAcc < 2:91823‑M2/40‑1 (MQ=255) cctcTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttat > 1:303643‑M2/1‑116 (MQ=255) gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATAc > 1:318296‑M2/93‑149 (MQ=255) cATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGGTTCAATGTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccg < 2:264075‑M2/149‑50 (MQ=255) attattAAAAATAACGATCGTCACCGGTAGGTTATATCGACAAATCGTTGCATTTTCCATTCCACTGAAACCAAAAGCACTATCACCTTCAATGTCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccga < 2:396214‑M2/149‑51 (MQ=255) aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGAt < 2:497757‑M2/61‑1 (MQ=255) ggagggaaagctgatagacacagaagccactggagcacctcaaaaacaccatcctacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGccc < 1:85235‑M2/65‑1 (MQ=255) agggacagctgatagaaacagaagccagtggagcaccgcaaaaacacgtttatagcgtaaatcagtaagttggcagcatcagCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCAt < 2:92575‑M2/67‑1 (MQ=255) ggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGa < 1:34943‑M2/69‑1 (MQ=255) tAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgccagatgactttgtca > 2:2982‑M2/1‑88 (MQ=255) gATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgca < 2:489224‑M2/149‑66 (MQ=255) gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAg < 1:4198‑M2/77‑1 (MQ=255) aatagaaacagaagccactggagcccctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAg < 1:341421‑M2/77‑1 (MQ=255) tCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgccccgtgactttgtcatgcagctcc < 2:173173‑M2/149‑71 (MQ=255) gccaccggagcaccccaaaaacaccatcatacactaaatcagtaagttggcagcaccacCAATGGCGACAACCGGAGAACCACAAGCCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATCACACCCCACGTACCACAATCCa < 2:510446‑M2/90‑1 (MQ=255) tCGACAAATCGTTTCAGGTTCGATGTGTCTGAAACCAAAACCACTATCACCTTAAATGGCGACggtaataactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatacagctccaccgattttgagaacg < 2:88791‑M2/149‑87 (MQ=255) tCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatcgagccccaccgatttcgagaacc < 1:62440‑M2/149‑87 (MQ=255) aaaTCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcggctcgaccgattttgggagcgacagc < 1:106715‑M2/149‑92 (MQ=255) acaacaacatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTATCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATAc < 2:221901‑M2/110‑1 (MQ=255) accatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTAc > 1:329925‑M2/38‑118 (MQ=255) accatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTAc < 2:329925‑M2/81‑1 (MQ=255) aTTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcc < 1:308015‑M2/149‑103 (MQ=255) ttCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccca < 2:394603‑M2/149‑105 (MQ=255) tacactaaatcaggaagttggcagcatcccCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCTAATACTGATGCCCACGACACGCCAGGTACCACGACCCAGACGCTGACGTGGTTTATAGATATCaata < 2:217010‑M2/119‑1 (MQ=255) cccACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgaacgataactttgtcatgcagctccacagattttgataacgacagcgacttccgtcccagccgtg < 2:363812‑M2/149‑111 (MQ=255) cACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcc < 1:71198‑M2/149‑113 (MQ=255) actaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATCTCAataata > 1:88636‑M2/28‑149 (MQ=255) aaCCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgc < 2:271364‑M2/149‑119 (MQ=255) aGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagatagtgcccgtggactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctca < 1:72510‑M2/149‑126 (MQ=255) agcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCTTTATCCAggg > 1:148804‑M2/9‑149 (MQ=255) cAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgc > 1:264075‑M2/1‑10 (MQ=255) CAATGGCGACAACCGGAGAACCAGAAGTCACGCTACCACCGATGGCATAGCCCATACCGACACCCATGACACCCCAGGTACCACAATCAAAATAACGACTTCGTTTATACACATCAATAAAACTTCCTACATTATCCAGGGTATTTGCa > 2:116722‑M2/1‑149 (MQ=255) cGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCa < 1:477745/149‑1 (MQ=255) cggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaatt > 1:312223‑M2/1‑1 (MQ=255) | CCAGCGCCACTGAGATCAACACCGTCTCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTA > NC_000913_3_pae_tpiA/2490485‑2490775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |