New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 2440343 =NA (NA)4 (0.140) 4/278 3.6 NA noncoding (1/36 nt) REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913_3_pae_tpiA 2440375 = NA (NA)noncoding (33/36 nt) REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTCCAGC  >  NC_000913_3_pae_tpiA/2440227‑2440517
                                                                                                                                                    |                                                                                                                                              
ggAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGATCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCACGTCTACTCCGAcc                                                                                                                                                >  1:377501/1‑149 (MQ=255)
         cAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGGTTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGaa                                                                                                                                       <  1:330933/149‑1 (MQ=255)
                  aaGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCttt                                                                                                                              >  1:324323/1‑149 (MQ=255)
                     tttGGCTGGAACTGGCGGCGAGTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCTACCTACTTCGGATTAATCTTTccg                                                                                                                           >  2:49063/1‑147 (MQ=255)
                        gCCTGGAACTGGCGGCGATTGTCAATGTTGTGAAAAAGGGAACCATCAGGTTCGCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCtt                                                                                                                        <  1:133336/149‑1 (MQ=255)
                          cTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTgc                                                                                                                      <  1:240277/149‑1 (MQ=255)
                           tGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTAGCGCGTCTACTCCGACCTCCTGCGAATTCATCTTTCAGCTTgcg                                                                                                                     >  2:414658/1‑149 (MQ=255)
                                 tGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCttt                                                                                                                              >  1:156989/1‑134 (MQ=255)
                                 tGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCttt                                                                                                                              <  2:156989/134‑1 (MQ=255)
                                      gcgATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTAAGTTAGTGCCGGAGGCCGCATTGGCGAGTAACGTCGGCTATTACTAAGTTGCGTCTACTCCACCCTACTGCGAGTTAATGTTTAAGATTGAGAATTatgagcc                                                                                                          >  1:121145/1‑143 (MQ=255)
                                       cgcttGTCAAGGGTGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGt                                                                                                         <  1:174938/146‑1 (MQ=255)
                                               aaTGATGTGAACAAGGGAACCATCAGGTTCACTTTTGCGTTAGTGCAGGAGACCAGATTGGACCGTAACCTCGGATGCGACGCTGGCGCGTCAACTCCGACCTACTGCGAATTAATCGCTAAGCTTCAGCCTTACCATCGTCGCGTTgc                                                                                                 >  2:475006/1‑148 (MQ=255)
                                                atgatgTGAAAAAGGGAACCACCAGTTTCGCGTGTACGCTCGTAAAGGCCAGGCCATTGGCGCGTACAGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGt                                                                                                <  1:249535/149‑1 (MQ=255)
                                                    tgtgCACAAGCGCACCCTCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTgccg                                                                                            <  2:493494/149‑1 (MQ=255)
                                                           aaGGGAACGAGCAGGTTCCCTTTGGCGGTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCGGCGTGGCGTTGGTGCCgccgaagc                                                                                     <  2:114405/149‑1 (MQ=255)
                                                               gAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTCCCAGCGTGGCGACGGTGCCgccgaagcagaa                                                                                 >  1:427640/1‑149 (MQ=255)
                                                                     tCAGGTTCCCTTTGGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCTGAAGCCGAAGCTGtt                                                                           <  2:488582/149‑1 (MQ=255)
                                                                      cAGGTTCCCGTGTGCGTTGGTGCCGTAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCTGACCTACTGCGCATCAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTa                                                                          <  2:124524/149‑1 (MQ=255)
                                                                            cccTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATa                                                                    >  1:107421/1‑149 (MQ=255)
                                                                               ttttGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCCCGTATACTCAGAACTATTGCGAAGTAATCTTGCAGCTTGCGCATTCCCACCGTGCCGTTGGTGCCGCCCATGCCGCAGGTGTTAGTCATACCg                                                                 >  2:83974/1‑149 (MQ=255)
                                                                                 ttGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACggt                                                               <  1:369317/149‑1 (MQ=255)
                                                                                                   ccGGATGGGCGCGTAACGTCGGATGCGACGCTGGCGCGGCTACTCCGACCTACTGCGAATTAACCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGt                                             <  1:175161/149‑1 (MQ=255)
                                                                                                           gcgcGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCgg                                     >  1:305631/1‑149 (MQ=255)
                                                                                                             gcgTAACGTCGGATGCGACGCTGGCGCGGCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCAATACCATCGGGGCTTTTGTTCCGCCGAAGCCGAAGCTGTTAGACAGAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTc                                   <  2:83975/149‑1 (MQ=255)
                                                                                                                                      gcgTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGCTTCGGTCACGATGTTCAGACCCGCCGCCTGCt          >  2:207738/1‑149 (MQ=255)
                                                                                                                                          ccacaccGACCTAGTGCGAATTAATCTTTCAGCGTGCGCATTACCCGCGGGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAAACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTc      <  2:412594/144‑1 (MQ=255)
                                                                                                                                           tACTCCGACCTACGGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTcc     <  2:421755/149‑1 (MQ=255)
                                                                                                                                              tCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTCCAGc  >  1:25309/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                              
GGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTCCAGC  >  NC_000913_3_pae_tpiA/2440227‑2440517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.