New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1979269	NA (NA)	29 (1.040)	27/284	0.1	100%	intergenic (‑54/‑484)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913_3_pae_tpiA	2490618 =	0 (0.000)					coding (1333/1695 nt)	oxc	oxalyl CoA decarboxylase, ThDP‑dependent

GATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/1979125‑1979269 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTA  >  NC_000913_3_pae_tpiA/2490618‑2490760                                                                                                                                                                                                                                                                                                  GATAGCGCAGATGTCCGGCGGGGCGTTTGCCGGTACCCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAT                                                                                                                                             <  2:52384/149‑1         TGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAA                                                                                                                                     >  1:172943/1‑149                  GCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAAC                                                                                                                            >  1:462995/1‑149                  GCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAAC                                                                                                                            <  2:462995/149‑1                       GCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAA                                                                                                                       <  2:380224/149‑1                                     GCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAACCAGCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCTACAACCGGAGAACCAGAAGTCACGCTCGCTCC                                                                                                         >  2:400055/1‑149                                          ACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGG                                                                                                    >  1:462955/1‑149                                                     AGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATA                                                                                         <  2:172943/149‑1                                                            aAGGAGGGACAGTTGATAGTAACAGAGGCCACTGGAGCACCTCAAAAACACTATCATTCACTAAATCAGTAAGTTGGCAGCAGCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGC                                                                                  <  2:400756/148‑1                                                                  cGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGA                                                                            <  1:65186/148‑1                                                                         TGATAGAAACAGAATCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCA                                                                     <  1:322300/149‑1                                                                         TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCA                                                                     <  2:330981/149‑1                                                                                AACAGAAGCCACTGGCGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTCGCCCCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCA                                                              <  1:401360/149‑1                                                                                     AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATC                                                         <  1:162265/149‑1                                                                                         CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATCCCCATGACACTCCAGGTACCACAATCCAGA                                                     <  1:269545/149‑1                                                                                          ACTGGGGCCCCGCAAAAACACCACCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGAC                                                    <  2:202149/149‑1                                                                                          ACTGGAGCACCTCAAAAACACGATCATACACTAGATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGCAACGACTGTACCTTTGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGAC                                                    >  1:365482/1‑149                                                                                          ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGAC                                                    <  1:385804/149‑1                                                                                                        AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTA                                      <  1:355901/149‑1                                                                                                          AACACCATCATACACTAAATCAGTAATTTGTCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATA                                    <  1:9705/149‑1                                                                                                               CATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCA                                                       <  1:413399/125‑1                                                                                                               CATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCA                                                       >  2:413399/1‑125                                                                                                                acCATACACGACATCAGTAAGTCGCCATCATCACCAATGGCGAAATCCGGAGAATCTGAAGTCACGCTAGAACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGATGACGTGGTTTCTACATATC                              <  2:420509/147‑1                                                                                                                  cagaccCTAAAGCAGAAAGTTGGCAGCATGAGCACTGTCGACAACCGCAGAACCAGAAGTCACGGTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAA                            <  2:496397/143‑1                                                                                                                       ACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCGTAGCCCATACCGATGCCCATTACACCCCAGGTACCACAATCCAGACGACGACGGGGTTTATACATAACAATAATt                       >  2:69682/1‑148                                                                                                                              CAGGAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTG                <  1:392943/149‑1                                                                                                                                        GCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCA                                                                               <  2:329964/76‑1                                                                                                                                        GCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCA                                                                               >  1:329964/1‑76                                                                                                                                            CATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTA  <  1:69682/149‑1                                                                                                                                                                                                                                                                                                  GATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/1979125‑1979269 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTA  >  NC_000913_3_pae_tpiA/2490618‑2490760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.