New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1552101 =	NA (NA)	33 (0.270)	30/220	7.5	NA	noncoding (31/97 nt)	RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913_3_pae_tpiA	1552249 =	NA (NA)					noncoding (1/97 nt)	RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

ATGAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/1552248‑1552101 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcatGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTG  >  NC_000913_3_pae_tpiA/1552249‑1552403                                                                                                                                                                                                                                                                                                                   ATGAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGC                                                                                                                                                           <  3:539889/150‑1  TGAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCC                                                                                                                                                          >  1:246677/1‑150    AACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGG                                                                                                                                                        >  2:217104/1‑150     ACAAAGCCTACGTTGTCTTCAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGA                                                                                                                                                       >  2:498733/1‑150                   GTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCGACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGC                                                                                                                                         <  2:340673/150‑1                              GAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCG                                                                                                                                                         >  2:1690439/1‑123                              GAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCG                                                                                                                                                         <  1:1690439/123‑1                                 AATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                                                                               >  2:1119227/1‑146                                 AATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                                                                               <  1:1119227/146‑1                                   tcACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAA                                                                                                                         <  4:893205/148‑1                                         CTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCG                                                                                                                                                         >  1:774437/1‑112                                         CTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCG                                                                                                                                                         <  2:774437/112‑1                                                            AACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAG                                                                                                >  1:1168012/1‑150                                                            AACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGC                                                                                                                                                           >  4:83358/1‑91                                                            AACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGC                                                                                                                                                           <  3:83358/91‑1                                                                GATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                                                                               <  3:678093/115‑1                                                                GATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                                                                               >  4:678093/1‑115                                                                   GACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGT                                                                                         >  1:550754/1‑150                                                                      AAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCA                                                                                                                              <  1:144373/110‑1                                                                      AAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCA                                                                                                                              >  2:144373/1‑110                                                                       AACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAG                                                                                     <  2:1168012/150‑1                                                                        ACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCAT                                                                                                                             >  2:222546/1‑109                                                                        ACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCAT                                                                                                                             <  1:222546/109‑1                                                                            AACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTG                                                                                <  2:550754/150‑1                                                                                   CCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCC                                                                                                                                                          <  3:977319/69‑1                                                                                   CCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCC                                                                                                                                                          >  4:977319/1‑69                                                                                     TGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGG                                                                                                                                >  2:101917/1‑93                                                                                     TGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGG                                                                                                                                <  1:101917/93‑1                                                                                           GCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGAT                                                                                                                                                      <  3:672112/65‑1                                                                                           GCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGAT                                                                                                                                                      >  4:672112/1‑65                                                                                            CTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTG‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCA                                                                                                                              <  1:1386582/88‑1                                                                                            CTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTG‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCA                                                                                                                              >  2:1386582/1‑88                                                                                             TACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCG                                                                                                                                 >  4:640210/1‑84                                                                                             TACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCG                                                                                                                                 <  3:640210/84‑1                                                                                                      CAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCAT                                                                                                                                                             <  3:832577/47‑1                                                                                                      CAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCAT                                                                                                                                                             >  4:832577/1‑47                                                                                                         GCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTG‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC                                                                                                                     >  2:394511/1‑84                                                                                                         GCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTG‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC                                                                                                                     <  1:394511/84‑1                                                                                                          cttagACGTTCGCTGTAATCTATAGGATTTGAAGGGTG‑‑TACATGCCGGATGCGGAGGGAACGCATTATCGGGCATGAAAACCCTTCAAATCCAATAGAGTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGT                                                  <  4:1021116/145‑1                                                                                                           CTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑T                                                                                                                                                                 <  3:932335/38‑1                                                                                                           CTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑T                                                                                                                                                                 >  4:932335/1‑38                                                                                                             ACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGG                                                                                                                                                        <  2:855955/45‑1                                                                                                             ACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGG                                                                                                                                                        >  1:855955/1‑45                                                                                                              CACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTC                                                                                                                                                               >  2:814190/1‑37                                                                                                              CACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTC                                                                                                                                                               <  1:814190/37‑1                                                                                                                  TTCACTGCAATCTATTGGATTTGAAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTT                                                                                                                   >  1:230425/1‑79                                                                                                                  TTCACTGCAATCTATTGGATTTGAAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTT                                                                                                                   <  2:230425/79‑1                                                                                                                         CAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCA                                                                                                 >  2:1420233/1‑88                                                                                                                         CAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCA                                                                                                 <  1:1420233/88‑1                                                                                                                                 TGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCA                                                                                                                              <  2:1399706/51‑1                                                                                                                                 TGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCA                                                                                                                              >  1:1399706/1‑51                                                                                                                                        GAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGC                                                                          >  2:795670/1‑96                                                                                                                                        GAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGC                                                                          <  1:795670/96‑1                                                                                                                                               T‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATC                                                                >  2:322922/1‑99                                                                                                                                               T‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATC                                                                <  1:322922/99‑1                                                                                                                                                  TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTA                                                                       >  2:1550773/1‑91                                                                                                                                                  TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTA                                                                       <  1:1550773/91‑1                                                                                                                                                   TCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGG                              >  3:995511/1‑131                                                                                                                                                   TCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGG                              <  4:995511/131‑1                                                                                                                                                   TCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAAC                                                                                           >  2:878987/1‑70                                                                                                                                                   TCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAAC                                                                                           <  1:878987/70‑1                                                                                                                                                    CATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTT                                                >  2:1534306/1‑112                                                                                                                                                    CATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTT                                                <  1:1534306/112‑1                                                                                                                                                    CATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGA                                                                               <  2:1728841/81‑1                                                                                                                                                    CATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGA                                                                               >  1:1728841/1‑81                                                                                                                                                    CATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCATTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTA                                   <  2:1535287/125‑1                                                                                                                                                    CATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCATTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTA                                   >  1:1535287/1‑125                                                                                                                                                     ATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTT         >  2:1513024/1‑150                                                                                                                                                     ATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTT         >  4:565356/1‑150                                                                                                                                                     ATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGT                 <  2:412328/142‑1                                                                                                                                                     ATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGT                 >  1:412328/1‑142                                                                                                                                                     ATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGAT                                                                                                     <  2:34366/58‑1                                                                                                                                                     ATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGAT                                                                                                     >  1:34366/1‑58                                                                                                                                                      TGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT        >  2:1700213/1‑150                                                                                                                                                       GCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAGTAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTT       <  1:944660/150‑1                                                                                                                                                        CCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTT      >  1:1010573/1‑150                                                                                                                                                         CGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTA     <  4:592575/150‑1                                                                                                                                                         CGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATC                                          >  1:374356/1‑113                                                                                                                                                         CGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATC                                          <  2:374356/113‑1                                                                                                                                                           GATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATT   <  4:1035790/150‑1                                                                                                                                                            ATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTG  <  1:1513024/150‑1                                                                                                                                                            ATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCG                                                   <  4:45815/101‑1                                                                                                                                                            ATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCG                                                   >  3:45815/1‑101                                                                                                                                                                                                                                                                                                                   ATGAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/1552248‑1552101 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcatGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTG  >  NC_000913_3_pae_tpiA/1552249‑1552403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.