New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 4150329172 (1.470)25 (0.230) 24/228 7.3 13.5% intergenic (‑148/+34) eptC/ppc LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase
?NC_000913_3_pae_tpiA = 4150339 160 (1.470)intergenic (‑158/+24) eptC/ppc LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 175 total aligned reads displayed.

AGTAAGAACCTGTCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGAGCGGTGCAGCA  >  NC_000913_3_pae_tpiA/4150182‑4150478
                                                                                                                                                   |                                                                                                                                                     
 gTAAGAACCTGTCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCgcgc                                                                                                                                                    >  2:466161/1‑150 (MQ=255)
  tAAGAACCTGTCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCTGCAAACCCTcgtgct                                                                                                                                                   >  1:69900/1‑146 (MQ=255)
     gAACCTGTCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCaaaa                                                                                                                                                <  3:887881/150‑1 (MQ=255)
            tCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAg                                                                                                                                         >  1:117155/1‑150 (MQ=255)
             cTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAgg                                                                                                                                        <  2:1352595/150‑1 (MQ=255)
              ttGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAggg                                                                                                                                       >  2:424572/1‑150 (MQ=255)
                gAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGa                                                                                                                                          <  3:36317/145‑1 (MQ=255)
                gAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAAGATATTGAAAACGAGGGTGTCAGAACGGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGCGtt                                                                                                                                     >  3:344196/1‑150 (MQ=255)
                gAAAAAATATCGCCGAATGTAACGACAATTCATTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGtt                                                                                                                                     >  3:492681/1‑150 (MQ=255)
                  aaaaaTAGCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTg                                                                                                                                   >  4:755732/1‑150 (MQ=255)
                         tCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCagaaga                                                                                                                            <  3:461288/150‑1 (MQ=255)
                           gCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAgg                                                                                                                          <  4:485541/150‑1 (MQ=255)
                           gCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAgg                                                                                                                          >  1:1214605/1‑150 (MQ=255)
                                     aCGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGcc                                                                                                                >  2:1360783/1‑150 (MQ=255)
                                        aCAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGt                                                                                                             <  1:375325/150‑1 (MQ=255)
                                        aCAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGt                                                                                                             <  1:1360783/150‑1 (MQ=255)
                                            ttCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTa                                                                                                         >  1:425599/1‑150 (MQ=255)
                                                  aaGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATa                                                                                                   <  3:755732/150‑1 (MQ=255)
                                                   aGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATAc                                                                                                  <  2:1214605/150‑1 (MQ=255)
                                                      atatCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGACCGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTg                                                                                               >  1:14067/1‑150 (MQ=255)
                                                       tatCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGc                                                                                              >  3:861422/1‑150 (MQ=255)
                                                        atCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGcc                                                                                             <  2:739537/150‑1 (MQ=255)
                                                            gAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGGGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGTGTTTGCAGAAGAGGAATATTAGCCGGTATTGCGCATACCTGCCGCaa                                                                                         >  4:264504/1‑150 (MQ=255)
                                                               ggTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCt                                                                                                <  3:271402/140‑1 (MQ=255)
                                                               ggTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATcc                                                                                      <  4:492681/150‑1 (MQ=255)
                                                                gTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATccc                                                                                     >  1:936796/1‑150 (MQ=255)
                                                                gTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATccc                                                                                     >  4:418757/1‑150 (MQ=255)
                                                                gTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATccc                                                                                     <  2:25653/150‑1 (MQ=255)
                                                                 tataTTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTg                                                                                                                                   <  4:628927/103‑1 (MQ=255)
                                                                 tataTTAAGAATGTGAATAAAATGCAGATAGAAATATAGTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCg                                                                                    <  4:78003/150‑1 (MQ=255)
                                                                  atatTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCgg                                                                                   <  3:51950/150‑1 (MQ=255)
                                                                  atatTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCgg                                                                                   <  2:936796/150‑1 (MQ=255)
                                                                  atatTCAGAATTATAATAAAATGCAGACAGAATGATATTGAAATCGAGTTTGTTAGAATAAAATTAATTCAGAAAACCCGCGCTGAAAAGCACGAGTGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCgg                                                                                   <  1:1246407/150‑1 (MQ=255)
                                                                   tatTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGc                                                                                  <  1:1279809/150‑1 (MQ=255)
                                                                     ttCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGAt                                                                                                                     >  1:285274/1‑113 (MQ=255)
                                                                     ttCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCa                                                                                                     >  3:536221/1‑129 (MQ=255)
                                                                     ttCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCa                                                                                                     <  4:536221/129‑1 (MQ=255)
                                                                      tCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCgcgc                                                                                                                                                    <  4:530260/81‑1 (MQ=255)
                                                                      tCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCaa                                                                                >  3:120871/1‑149 (MQ=255)
                                                                      tCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCaa                                                                                <  4:120871/149‑1 (MQ=255)
                                                                      tCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAAt                                                                               >  1:41671/1‑150 (MQ=255)
                                                                       cAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATa                                                                              >  4:475253/1‑150 (MQ=255)
                                                                        aGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATa                                                                              >  1:705353/1‑149 (MQ=255)
                                                                        aGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATa                                                                              <  2:705353/149‑1 (MQ=255)
                                                                        aGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAg                                                                             >  3:17515/1‑150 (MQ=255)
                                                                            tttGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGAc                                                                         >  2:1096789/1‑150 (MQ=255)
                                                                                aaTAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGa                                                                                                                                          <  3:410067/81‑1 (MQ=255)
                                                                                aaTAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCgg                                                                                                              >  1:455395/1‑109 (MQ=255)
                                                                                  tAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCaa                                                                                         >  2:1259919/1‑128 (MQ=255)
                                                                                   aaaaTGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAAc                                                                  <  1:966180/150‑1 (MQ=255)
                                                                                        gCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTg                                                             >  2:1400995/1‑150 (MQ=255)
                                                                                         cagacagaAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGt                                                            <  4:861422/150‑1 (MQ=255)
                                                                                            acagaAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGaa                                                                                                                        >  2:899384/1‑87 (MQ=255)
                                                                                            acagaAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGaa                                                                                                                        <  1:899384/87‑1 (MQ=255)
                                                                                            acagaAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCg                                                         >  1:1156440/1‑150 (MQ=255)
                                                                                              agaAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCa                                                                                                                                             >  3:185099/1‑64 (MQ=255)
                                                                                              agaAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCa                                                                                                                                             <  4:185099/64‑1 (MQ=255)
                                                                                              agaAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGAc                                                       >  2:996033/1‑150 (MQ=255)
                                                                                                  atatatTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATa                                                                              >  4:837561/1‑123 (MQ=255)
                                                                                                  atatatTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGa                                                   <  3:834919/150‑1 (MQ=255)
                                                                                                  atatatTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGa                                                   <  3:418757/150‑1 (MQ=255)
                                                                                                      atTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGtt                                                           >  1:570426/1‑138 (MQ=255)
                                                                                                       ttGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATc                                              <  2:425599/150‑1 (MQ=255)
                                                                                                        tGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATa                                                                              <  3:358994/117‑1 (MQ=255)
                                                                                                        tGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATcc                                             >  2:242963/1‑150 (MQ=255)
                                                                                                         gAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCg                                            >  4:394077/1‑150 (MQ=255)
                                                                                                         gAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCg                                            <  2:1156440/150‑1 (MQ=255)
                                                                                                           aaaCGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGa                                                                                                                         >  2:1285146/1‑71 (MQ=255)
                                                                                                           aaaCGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGt                                          <  1:996033/150‑1 (MQ=255)
                                                                                                             aCGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTc                                        >  4:445559/1‑150 (MQ=255)
                                                                                                               gAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCt                                      <  2:381029/150‑1 (MQ=255)
                                                                                                                aGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTg                                     <  1:1096789/150‑1 (MQ=255)
                                                                                                                 gggTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAg                                                                             <  2:1175469/109‑1 (MQ=255)
                                                                                                                  ggTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCtt                                                              <  2:660566/123‑1 (MQ=255)
                                                                                                                  ggTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGc                                   <  3:544107/150‑1 (MQ=255)
                                                                                                                  ggTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGAtt                                                              >  1:660566/1‑123 (MQ=255)
                                                                                                                    tgtTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTa                                                                                                            <  2:966103/75‑1 (MQ=255)
                                                                                                                    tgtTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTa                                                                                                            >  1:966103/1‑75 (MQ=255)
                                                                                                                      ttAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATcc                                                                                      >  3:857565/1‑95 (MQ=255)
                                                                                                                        aGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGAcgc                                                     <  1:1200339/126‑1 (MQ=255)
                                                                                                                        aGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGa                                                   >  4:384347/1‑128 (MQ=255)
                                                                                                                         gAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCttt                            >  1:130230/1‑150 (MQ=255)
                                                                                                                             aGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGt                                                                                                             >  2:991096/1‑65 (MQ=255)
                                                                                                                             aGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGt                                                                                                             <  1:991096/65‑1 (MQ=255)
                                                                                                                                    tttCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACg                                                                                                       <  2:293222/64‑1 (MQ=255)
                                                                                                                                    tttCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACg                                                                                                       >  1:293222/1‑64 (MQ=255)
                                                                                                                                     ttCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCg                <  1:13167/150‑1 (MQ=255)
                                                                                                                                      tCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTAtt                                                                                                          >  4:322083/1‑59 (MQ=255)
                                                                                                                                        aGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGa             >  3:222913/1‑150 (MQ=255)
                                                                                                                                         gAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTc                         >  2:1080313/1‑137 (MQ=255)
                                                                                                                                         gAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTc                         <  1:1080313/137‑1 (MQ=255)
                                                                                                                                         gAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGAg            >  3:374934/1‑150 (MQ=255)
                                                                                                                                         gAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGACTTCTTTTTCTGCCTGGCGGGAg            <  4:36212/150‑1 (MQ=255)
                                                                                                                                          aaaaCCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCAt                                                                                                    >  4:665981/1‑61 (MQ=255)
                                                                                                                                          aaaaCCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCAt                                                                                                    <  3:665981/61‑1 (MQ=255)
                                                                                                                                               ccTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGt                                          >  4:4640/1‑114 (MQ=255)
                                                                                                                                               ccTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGAGCGGTgc      >  3:466342/1‑150 (MQ=255)
                                                                                                                                               ccTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAAGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGAGCGGTgc      >  2:1201267/1‑150 (MQ=255)
                                                                                                                                                cTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGAGCGGTgca     <  3:661383/150‑1 (MQ=255)
                                                                                                                                                   gcgcAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGAGCGGTgcagca  >  2:224962/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
AGTAAGAACCTGTCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGAGCGGTGCAGCA  >  NC_000913_3_pae_tpiA/4150182‑4150478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.