New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 458305328 (0.970)5 (0.180) 5/274 3.2 16.4% intergenic (‑89/+112) hsdM/hsdR DNA methyltransferase M/endonuclease R Type I restriction enzyme
?NC_000913_3_pae_tpiA = 4583140 24 (0.870)intergenic (‑176/+25) hsdM/hsdR DNA methyltransferase M/endonuclease R Type I restriction enzyme
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGA  >  NC_000913_3_pae_tpiA/4582908‑4583196
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aTCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACCAAATCATTTAGGTTg                                                                                                                                               >  1:193018/1‑149 (MQ=255)
         gTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAggc                                                                                                                                      <  2:140934/149‑1 (MQ=255)
               gCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAag                                                                                                                                >  2:49803/1‑149 (MQ=255)
                cacagcttccatagctgcGCGACCAGTGCTTTATTGTTGATTTGTAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAagt                                                                                                                               <  2:181043/149‑1 (MQ=38)
                 acagcttccacagcttcGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAagtg                                                                                                                              >  1:366400/1‑149 (MQ=255)
                    gcttccacagcttcGCGACCAGATCGTTATTGTTCCTTGTGAGTTCGGTAAACTAAGCAGCGGCCCAAATTCATCGGGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAagtgagt                                                                                                                           <  2:460662/149‑1 (MQ=255)
                          acagcttgGCGACCAGATCGTGATTGTTCACTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATcc                                                                                                                     <  2:194081/149‑1 (MQ=255)
                                     accaagtCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTa                                                                                                          <  2:78204/143‑1 (MQ=255)
                                      ccAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTAc                                                                                                         >  1:78578/1‑149 (MQ=255)
                                          aTCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCACTCAGGTTGCATCATGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGaa                                                                                                     >  1:418368/1‑149 (MQ=255)
                                              ttATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCACATTCATCAACCCCAAGCAGTAGACCTTGCTCAGGGTATTGTCTTAATTCCTTTTTTGATTTCATCAATACGGCAATTGATTGAATCCCCGGGAGCGTACAGAAGTAc                                                                                                 >  2:497789/1‑149 (MQ=255)
                                                   gTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGAc                                                                                            >  2:354538/1‑149 (MQ=255)
                                                        ttGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCgggg                                                                                       >  2:44408/1‑149 (MQ=255)
                                                         tgtgAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGt                                                                                      <  2:145923/149‑1 (MQ=255)
                                                           tgAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATACCCGGGAGCGTACAGAAGTACGTGACCGGGGGGa                                                                                    >  1:185522/1‑149 (MQ=255)
                                                                   gTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGGGGCAAGTGAGTGAATCCCCGGTAGCGTACAGAAGTACGTGACCGGGGTGAACGAacgc                                                                            >  2:55248/1‑149 (MQ=255)
                                                                              agcGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCag                                                                >  1:165125/1‑149 (MQ=255)
                                                                                   cccAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGAAGAGGCa                                                           >  2:265152/1‑149 (MQ=255)
                                                                                                        aagaagaaATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGtata                                      <  2:359404/149‑1 (MQ=255)
                                                                                                          gaagaaATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACACACGTACGTGACCGGCGTGAACGAGCGCATCCAAAGCAGAGGCAGCCTGAAGGATGAAGTGTATACg                                    >  1:71953/1‑149 (MQ=37)
                                                                                                               aaTTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCa                               >  1:440633/1‑149 (MQ=255)
                                                                                                                agtGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAg                              <  2:461379/147‑1 (MQ=255)
                                                                                                                  tGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGc                            <  1:354538/149‑1 (MQ=255)
                                                                                                                            aaTATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGACCGAGCGCAGCCCCACGGTAGCCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTcc                  <  1:497789/149‑1 (MQ=38)
                                                                                                                              tataCACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCa                <  1:44408/149‑1 (MQ=255)
                                                                                                                                  cacaAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGata            <  2:165125/149‑1 (MQ=255)
                                                                                                                                         tCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGc     >  2:421032/1‑149 (MQ=255)
                                                                                                                                             ttCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGa  >  1:310466/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                
ATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGA  >  NC_000913_3_pae_tpiA/4582908‑4583196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.