mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 25.3% | 322.1 / 123.3 | 190 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_pae_tpiA | 3,428,678 | 0 | A | T | 24.0% | 38.2 / 11.6 | 25 | noncoding (85/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913_3_pae_tpiA | 3,428,679 | 0 | A | T | 24.0% | 35.6 / 13.0 | 25 | noncoding (84/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913_3_pae_tpiA | 475,971 | 0 | C | G | 20.2% | 401.4 / 101.9 | 158 | intergenic (+20/+11) | ybaY/ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| * | NC_000913_3_pae_tpiA | 475,972 | 0 | C | G | 20.2% | 403.4 / 100.0 | 158 | intergenic (+21/+10) | ybaY/ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| Marginal new junction evidence (lowest skew 10 of 740 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 2700550 = | 156 (1.190) | 23 (0.210) | 20/214 | 9.4 | 15.2% | noncoding (31/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913_3_pae_tpiA | 2700601 = | 125 (1.130) | intergenic (+5/+17) | ohsC/acpS | sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913_3_pae_tpiA | 4171676 = | 155 (1.190) | 31 (0.270) | 21/224 | 9.6 | 18.4% | intergenic (+4/‑297) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913_3_pae_tpiA | 4171720 = | NA (NA) | intergenic (+48/‑253) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3269966 | 147 (1.120) | 24 (0.200) | 21/228 | 9.8 | 17.0% | intergenic (+364/+250) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913_3_pae_tpiA | = 3270196 | 101 (0.850) | intergenic (+594/+20) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3269966 | 147 (1.120) | 24 (0.200) | 21/228 | 9.8 | 17.5% | intergenic (+364/+250) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913_3_pae_tpiA | = 3270083 | 94 (0.800) | intergenic (+481/+133) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | NC_000913_3_pae_tpiA | 1217091 = | 118 (0.900) | 24 (0.200) | 20/236 | 10.5 | 17.6% | intergenic (+95/‑237) | ymgC/ycgG | Blue light, low temperature and stress induced protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913_3_pae_tpiA | 1217145 = | 114 (0.930) | intergenic (+149/‑183) | ymgC/ycgG | Blue light, low temperature and stress induced protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 382205 | NA (NA) | 36 (0.280) | 22/250 | 10.5 | NA | coding (532/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_pae_tpiA | = 382224 | NA (NA) | coding (551/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913_3_pae_tpiA | = 715221 | 126 (0.960) | 20 (0.170) | 19/230 | 10.6 | 14.9% | intergenic (+23/‑191) | pgm/ybfP | phosphoglucomutase/lipoprotein |
| ? | NC_000913_3_pae_tpiA | = 715231 | 113 (0.950) | intergenic (+33/‑181) | pgm/ybfP | phosphoglucomutase/lipoprotein | |||||
| * | ? | NC_000913_3_pae_tpiA | 2726200 = | NA (NA) | 34 (0.270) | 20/240 | 10.7 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_pae_tpiA | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 2068389 = | 146 (1.120) | 17 (0.150) | 17/216 | 10.7 | 13.2% | pseudogene (31/159 nt) | yoeH | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| ? | NC_000913_3_pae_tpiA | 2068430 = | 98 (0.880) | intergenic (‑11/‑205) | yoeH/yoeA | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/CP4‑44 prophage; putative disrupted hemin or colicin receptor;Phage or Prophage Related; interrupted by IS2 and C‑terminal deletion | |||||
| * | ? | NC_000913_3_pae_tpiA | 1096992 = | 126 (0.960) | 23 (0.180) | 20/242 | 10.8 | 16.0% | intergenic (+163/+573) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_tpiA | 1097187 = | NA (NA) | intergenic (+358/+378) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||