New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 258700549 (0.860)5 (0.090) 5/270 7.3 9.0% coding (1275/1701 nt) narQ sensory histidine kinase in two‑component regulatory system with NarP
?NC_000913_3_pae_tpiA = 2587014 55 (1.020)coding (1284/1701 nt) narQ sensory histidine kinase in two‑component regulatory system with NarP
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCAGTTGACGTTACTGAAGCGTTCGATACCGGAAGATAACGCCACCGCACAAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTCGCGAAGC  >  NC_000913_3_pae_tpiA/2586875‑2587160
                                                                                                                                           |                                                                                                                                                  
tCCAGTTGACGTTACTGAAGCGTTCGATACCGGAAGATAACGCCACCGCACAAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTAATTTCCGACTGACGCTGCAGCAGGCGGAt                                                                                                                                           >  1:776852/1‑149 (MQ=255)
  cAGTTGACGTTACTGAAGCGTTCGATACCGGAAGATAACGCCACCGCACAAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGAtct                                                                                                                                         >  1:319143/1‑149 (MQ=255)
     ttGACGTTACTGAAGCGTTCGATACCGGAAGATAACGCCACCGCACAAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTccc                                                                                                                                      <  1:429443/149‑1 (MQ=255)
          gTTACTGAAGCGTTCGATACCGGAAGATAACGCCACCGCACAAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCg                                                                                                                                 >  1:358219/1‑149 (MQ=255)
           ttACTGAAGCGTTCGATACCGGAAGATAACGCCACCGCACAAAGTATCATGGCTGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCCGACGCTGCAGCAGGCGGATCTCCCCTCCGc                                                                                                                                >  1:666169/1‑149 (MQ=255)
                 caGCGTTCCCTTCCGGAAGATAACGCCACCGCAAAAATTATCATGGCCGATTTTTCCCAGGAGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAg                                                                                                                          <  1:68389/148‑1 (MQ=255)
                 aaGCGTTCGATACCGGAAGATAACGCCACCGCACAAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGATGCCGCAGGCGGATCTCCCCTCCGCATTgct                                                                                                                          >  1:70975/1‑147 (MQ=255)
                   gCGTTCGATACCGGAAGATAACGCCACCGCACAAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAggg                                                                                                                        >  2:513721/1‑149 (MQ=255)
                       ttgATACCGGAAGATAACGCCATCGCACAATGTATCATGGCCGATTTTTCCCCGGCGTTGACTGATGCTTAGCGGGCGTTACTCGCGCTGTTGACTACTTTCCGCCTGACGTTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAAt                                                                                                                    <  2:1361/147‑1 (MQ=255)
                           tgacGGAAGGTAACGCCGCGCGACAAAGTATCGTGGCGGATTTTGCCGAGGCGGTGAATGATTCTTATCGGCAGTTACGTGAGCTGTTGTCTACTTTCCGTCTGTCGCTGCAGCAGGCGGATCTCCCCTACGCATTGAGGGAAATGCTg                                                                                                                <  2:387288/146‑1 (MQ=255)
                              cGGAAGATAACGCCACCGCACAAAGTATCATGGCCGATTTTTCCCAGGCGGTGAATGATGCTTATCGGCAGTTACGCGGGCTGTTGACTACGTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGCAt                                                                                                             >  1:782519/1‑149 (MQ=255)
                                       aCGCCACCGCACAGAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACaa                                                                                                    >  2:375854/1‑149 (MQ=255)
                                       aCGCCACCGCACAAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACaa                                                                                                    <  2:356526/149‑1 (MQ=255)
                                        cGCCACCGCACAAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGCTACGTTACaaa                                                                                                   >  1:838694/1‑149 (MQ=255)
                                         gCCACCGCACAAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGCTACGTACCaaac                                                                                                  >  2:391553/1‑148 (MQ=255)
                                             ccGCACAAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCGGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCaa                                                                                              >  1:842293/1‑149 (MQ=255)
                                               gCACAAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCGCCGCCTTGAGGGAAATGCTGGATACGTTACAAAATCAAAc                                                                                            >  1:454828/1‑149 (MQ=255)
                                                cacaAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGAtctc                                                                                                                                        <  1:964500/104‑1 (MQ=255)
                                                cacaAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGAtctc                                                                                                                                        >  2:964500/1‑104 (MQ=255)
                                                       tATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCa                                                                                    >  1:760447/1‑149 (MQ=255)
                                                           aTGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCGGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGGGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCaaagt                                                                                >  2:520333/1‑147 (MQ=255)
                                                                cGATTTTGCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGAccc                                                                           <  2:239828/149‑1 (MQ=255)
                                                                 gATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCCACGACGGAACTGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGAACCt                                                                          >  1:443847/1‑149 (MQ=255)
                                                                 gATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCGGCGCCAAACTGAcctt                                                                          >  1:35408/1‑147 (MQ=255)
                                                                        cccAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTGGACTCCTTTCCGCCTGACGCTGCAGCAGGCGCATCTCCCCTCCGCATTGGTGGGAATGCTGGATACGTTACACAATCAACCCAGCCCCAAACTGACCCTCCACTGc                                                                   >  2:185710/1‑149 (MQ=255)
                                                                           aGGCGTTTAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCGTTGTGGGAAATGCTGGTTACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGt                                                                <  1:144590/149‑1 (MQ=255)
                                                                           aGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCCTTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCTCCAACCTGACCCTCCACTGCCGt                                                                >  2:383951/1‑149 (MQ=255)
                                                                              cGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTg                                                             <  1:974242/149‑1 (MQ=255)
                                                                               gTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCACACTGACCCTCGACTGCCGTCTGc                                                            >  1:495562/1‑149 (MQ=255)
                                                                               gTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTCACCCTCGACTGCCGTCtcc                                                            >  1:723786/1‑147 (MQ=255)
                                                                                     tgatcCTTATCGGCATGTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCAATGAGTGAAAGGCTGGATACGTTACAAATTCACACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCagggt                                                      <  1:140615/149‑5 (MQ=255)
                                                                                           tgaTCGGCAGTTACGCGAGCTGGTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCAc                                                <  1:560530/147‑1 (MQ=255)
                                                                                                ggCCGTTACGCGAGCTGTTGACTACTTTCCGTCCGACGCTGCAGCAGGCGGATCTCCCATCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGAt                                           <  1:466250/149‑1 (MQ=255)
                                                                                                         gcgAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATg                                  >  1:683137/1‑149 (MQ=255)
                                                                                                          cgAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGc                                 <  2:630737/149‑1 (MQ=255)
                                                                                                          cgAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGc                                 >  1:273454/1‑149 (MQ=255)
                                                                                                            aGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAg                               <  1:375854/149‑1 (MQ=255)
                                                                                                               tGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTg                            >  2:1004934/1‑149 (MQ=255)
                                                                                                                gTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGc                           <  2:760447/149‑1 (MQ=255)
                                                                                                                 ttGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGCGCa                          >  1:359448/1‑149 (MQ=255)
                                                                                                                   gACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGTCACGGGATGGGCAAATGCGGGGGCAtt                        >  1:922336/1‑149 (MQ=255)
                                                                                                                      tactTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATttgt                     >  1:423081/1‑149 (MQ=255)
                                                                                                                         tttCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGGAAAGGCAGGTGCAGTTGTTGc                  >  1:520243/1‑149 (MQ=255)
                                                                                                                           tCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATTTGTTGCaa                >  2:642039/1‑149 (MQ=255)
                                                                                                                            ccgcaggACGCTGCAGCAGGCGGATATCCACTACGCATTGAGGGAAATGCTGGATACGCTACACAATCCAACCCGAGCCAAACTGACCCTCCACTGCCGTCTGCCAACGATGGCACTGGATGCGCAAATGCAGGTGCAGTAGTTGCaaa               >  2:754398/7‑149 (MQ=255)
                                                                                                                            ccGCCTGACGCTGCAGCCGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATTTGTTGCaaa               <  1:132347/149‑1 (MQ=255)
                                                                                                                            ccGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATTTGTTGCaaa               <  1:642039/149‑1 (MQ=255)
                                                                                                                            ccGCCTGACGCTGCAGCAGCCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATTTGTTGCaaa               <  1:132346/149‑1 (MQ=255)
                                                                                                                                 tGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAattatt          <  1:1004934/149‑1 (MQ=255)
                                                                                                                                   tcGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTcg        <  2:497307/148‑1 (MQ=255)
                                                                                                                                    cGCTGGAGCAGGCTGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTcgc       <  1:939354/149‑1 (MQ=255)
                                                                                                                                     gCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAGGTGCAGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTcgca      >  1:497307/1‑148 (MQ=255)
                                                                                                                                     gCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTcgcg      >  1:261461/1‑149 (MQ=255)
                                                                                                                                     gCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTATGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTcgcg      >  2:396547/1‑149 (MQ=255)
                                                                                                                                         aagcagGCGGATGTCCCGACTGGATTGAGGGAAAGTCTGGATATGTTACAAAAGCAAGCCAGCGCCAATCTGACCTTCGACTGCCGTCTGCCTACCCTGGCACTGGATGCTCAAATGCAGGTGCATTTGTTGCAAATTATTCGGGAAGc  <  2:21607/148‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                                  
TCCAGTTGACGTTACTGAAGCGTTCGATACCGGAAGATAACGCCACCGCACAAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTCGCGAAGC  >  NC_000913_3_pae_tpiA/2586875‑2587160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.