| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1217413 = | 115 (0.660) | 53 (0.300) | 44/246 | 6.2 | 31.6% | coding (86/1524 nt) | ycgG | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913_3_pae_tpiA | = 1469240 | NA (NA) | intergenic (‑91/‑1) | insC1/ydbA | IS2 repressor TnpA/pseudogene, autotransporter homolog; interrupted by IS2 and IS30 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
AAGCTGATATTGCTCCTCGAGGTTGCATTCCTTCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/1217552‑1217413‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACA < NC_000913_3_pae_tpiA/1469240‑1469103 AAGCTGATATTGCTCCTCGAGGTTGCATTCCTTCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCC > 1:1872736/1‑150AAGCTGATATTGCTCCTCGAGGTTGCATTCCTTCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCC < 1:2037029/150‑1 ATTGCTCCTCGAGGTTGCATTCCTTCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAAT > 1:780938/1‑150 gccCCTCGAGGTTGCATTCCTGCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGGTATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTC < 4:490906/147‑1 CTCCTCGAGGTTGCATTCCTTCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCC > 3:585227/1‑150 CTCCTCGAGGTTGCATTCCTTCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCC < 2:257021/150‑1 CTCCTCGAGGTTGCATTCCTTCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCATCAAGTATAGGATTGATATTGTTGGCGCCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCC > 4:1034351/1‑150 CCTCGAGGTTGCATTCCTTCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAG < 2:145412/150‑1 TCGAGGTTGCATTCCTTCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGAC > 1:34304/1‑150 CATTCCTTCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATAT > 2:304755/1‑150 CATTCCTTCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGATCCAGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATAT < 2:1330970/150‑1 CCTCCCCGGCAATGTTAACCGCTGTTTGACTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGCATCTCCAGACAACCAATATCACT < 2:780938/150‑1 CTTCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTT < 3:839883/150‑1 TTCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTA > 2:126111/1‑150 CCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAT > 1:1623174/1‑150 GGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAA < 3:419166/150‑1 GCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAG < 2:2096348/150‑1 TTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTA < 1:126111/150‑1 TGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAC < 2:1613861/150‑1 GACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACC < 4:1246992/103‑1 GACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACC > 3:1246992/1‑103 GCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCA > 1:944276/1‑150 GCTTCTTCAAGTATATGATTGATATCGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCA > 2:1314129/1‑150 TTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGA < 2:34304/150‑1 TCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAG < 4:585227/150‑1 TCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAG > 4:36784/1‑150 CAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTT > 2:1022479/1‑132 CAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTT < 1:1022479/132‑1 TATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTT < 1:865536/99‑1 TATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTT > 2:865536/1‑99 ATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGA < 4:738033/150‑1 TGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAA > 2:667966/1‑114 TGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAA < 1:667966/114‑1 ATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCA > 2:399534/1‑90 ATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCA < 1:399534/90‑1 TTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAG < 4:669602/90‑1 TTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAG > 3:669602/1‑90 GGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGG < 2:1009776/150‑1 GCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGC < 1:1314129/150‑1 GCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTG < 1:489159/120‑1 GCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTG > 2:489159/1‑120 CGCTCCCGCCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGC < 3:302334/150‑1 CCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCG < 4:1160806/150‑1 CCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCG < 4:1161132/150‑1 CCAGGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCG < 2:1872736/150‑1 GGTACTCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAC < 3:316106/150‑1 TCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAA > 1:2126912/1‑72 TCTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAA < 2:2126912/72‑1 CTGCTTTTGCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAGGATTTATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACA < 3:36784/150‑1 CGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTA > 1:148120/1‑109 CGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTA < 2:148120/109‑1 GTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGC < 4:245155/122‑1 GTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGC > 3:245155/1‑122 AAGCTGATATTGCTCCTCGAGGTTGCATTCCTTCCCGGCAATGTTAACCGCTGTTTGAGTCGCTTGTGACGCTTCTTCAAGTATATGATTGATATTGTTGGCGGCATATCTCGCTCCCGCCAGGTACTCTGCTTTTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/1217552‑1217413‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACA < NC_000913_3_pae_tpiA/1469240‑1469103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |