BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913_3_pae_tpiA	4,110,974	0	C	A	64.4%	102.9 / 157.6	132	intergenic (+289/+557)	cdh/yiiQ	CDP‑diacylglycerol phosphotidylhydrolase/DUF1454 family putative periplasmic protein
Reads supporting (aligned to +/- strand): ref base C (24/23); new base A (46/39); total (70/62)
Fisher's exact test for biased strand distribution p-value = 8.56e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.08e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 132 total aligned reads displayed.

ACTCCCCTCGTGCCGAGTTTAAGCGCGGCTTCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGCCCTGGCAGTTAGTTTAGCTATTTC  >  NC_000913_3_pae_tpiA/4110828‑4111120

acTCCCCTCGTGCCGAGTTTAAGCGCGGCTTCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTc                                                                                                                                                 >  3:905869/1‑150 (MQ=255)

acTCCCCTCGTGCCGAGTTTAAGCGCGGCTTCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTc                                                                                                                                                 <  1:1792027/150‑1 (MQ=255)

acTCACCTCCCGCCGAGTTCACGAGCGCCTCAAACGTCCTCTACGCTCCCACTACCCGCCCCCAACCATAAGACAACGACCGGCACGCGCCTCCCCCCTAGCTGGACAGTTTCCACACCAGTCTCGGGTTTATACTTGGAGACAGCACTc                                                                                                                                                 <  3:1026700/150‑1 (MQ=255)

    cccTCGTGCCGAGTTTAAGCGCGGCTTCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCgg                                                                                                                                             >  3:568948/1‑150 (MQ=255)

       tCGTGCCGAGTTTAAGCGCGGCTTCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTcc                                                                                                                                          <  4:568948/150‑1 (MQ=255)

           gCCGAGTTTAATCGCGGCTTCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTTGACAGTTTCCACGACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGAt                                                                                                                                      <  2:1565285/150‑1 (MQ=255)

           gCCGAGTTTAAGCGCGGCTTCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGAt                                                                                                                                      <  3:568321/150‑1 (MQ=255)

                 tttAAGCGCGGCTTCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTc                                                                                                                                >  3:767652/1‑150 (MQ=255)

                      gcgcGGCTTCTACTTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCa                                                                                                                                    <  1:1142771/141‑1 (MQ=255)

                      gcgcGGCTTCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCggggg                                                                                                                           >  1:1063570/1‑150 (MQ=255)

                            cTTCAACGTCCTCTCCGCTCTCAATCCCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGAt                                                                                                                                      <  2:1779455/133‑1 (MQ=255)

                            cTTCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGAt                                                                                                                                      >  1:1779455/1‑133 (MQ=255)

                            cTTCAACGTCCTCTCCGCGCTCAATACCCGCCCCAGTGATTACGGCGACGTCATGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCaa                                                                                                                     >  4:266081/1‑150 (MQ=255)

                             ttCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAAc                                                                                                                    >  3:752450/1‑150 (MQ=255)

                             ttCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAAc                                                                                                                    >  3:1062121/1‑150 (MQ=255)

                             ttCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGCTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAAc                                                                                                                    >  1:1975030/1‑150 (MQ=255)

                                  cGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGa                                                                                                               >  1:833642/1‑150 (MQ=255)

                                  cGTCCTCTCCGCTCTCAATACCCGCCCCAGTTACTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGa                                                                                                               <  2:131520/150‑1 (MQ=255)

                                   gTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGAc                                                                                                              <  4:1062121/150‑1 (MQ=255)

                                    tCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACt                                                                                                             <  3:1255339/150‑1 (MQ=255)

                                         tcCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATg                                                                                                        >  3:774606/1‑150 (MQ=255)

                                            gCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCgg                                                                                                     <  2:1767488/150‑1 (MQ=255)

                                            gCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCgg                                                                                                     >  4:316766/1‑150 (MQ=255)

                                             ctctCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCggg                                                                                                    >  1:1307701/1‑150 (MQ=255)

                                              tctcAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGTGGGc                                                                                                   <  2:1063570/150‑1 (MQ=255)

                                                 cAATACCCGCCCCAGTTATTACGGCGACGTCAGGTAAATCCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTa                                                                                                >  2:907699/1‑150 (MQ=255)

                                                  aaTACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCa                                                                                                                                    <  1:1618549/113‑1 (MQ=255)

                                                         gCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTcc                                                                                                                                          >  2:123152/1‑100 (MQ=255)

                                                         gCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTcc                                                                                                                                          <  1:123152/100‑1 (MQ=255)

                                                          ccctAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTCTACTTCGCGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCCCAACGGCGACTGCATGCGGGCTTAGggcggcgg                                                                                       <  2:209648/150‑1 (MQ=255)

                                                          ccccAGTTAGTACGCCGACTTCACGGAAGTGCCTCCCCACTAGCTTGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGTTCCCGTTCTGCTCGCGGGGCAAAACGGCGACTGCACGCGTGCTTAGcgcggcga                                                                                       <  2:209723/150‑2 (MQ=255)

                                                                ttattaCGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCggg                                                                                                    >  1:2001748/1‑131 (MQ=255)

                                                                ttattaCGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCggg                                                                                                    <  2:2001748/131‑1 (MQ=255)

                                                                ttattaCGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCaa                                                                                 <  4:752450/150‑1 (MQ=255)

                                                                   ttaCGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGc                                                                              >  1:593758/1‑150 (MQ=255)

                                                                   ttaCGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGc                                                                              >  3:66250/1‑150 (MQ=255)

                                                                     aCGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTg                                                                            >  2:1832978/1‑150 (MQ=255)

                                                                      cGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGc                                                                              <  3:625023/147‑1 (MQ=255)

                                                                      cGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGc                                                                              >  4:625023/1‑147 (MQ=255)

                                                                      cGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTgg                                                                           <  3:754351/150‑1 (MQ=255)

                                                                      cGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTgg                                                                           >  2:1800166/1‑150 (MQ=255)

                                                                       ggCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGt                                                                          <  4:41727/150‑1 (MQ=255)

                                                                                aGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGAc                                                                                                              <  2:1287821/105‑1 (MQ=255)

                                                                                aGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGCAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGAc                                                                                                              >  1:1287821/1‑105 (MQ=255)

                                                                                   gAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCggg                                                              <  1:1235130/150‑1 (MQ=255)

                                                                                   gAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCggg                                                              <  2:952429/150‑1 (MQ=255)

                                                                                     aGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCggggg                                                            <  3:316766/150‑1 (MQ=255)

                                                                                         ccTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCa                                                                                                                                    <  3:328222/74‑1 (MQ=255)

                                                                                          cTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGCTTATACTTGGAGACATCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAg                                                       >  4:1157626/1‑150 (MQ=255)

                                                                                             cccACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATa                                                    >  2:1658296/1‑150 (MQ=255)

                                                                                               cACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCggggg                                                            <  4:1317758/140‑1 (MQ=255)

                                                                                               cACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCggggg                                                            >  3:1317758/1‑140 (MQ=255)

                                                                                                aCTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTccc                                                                                                                                         >  3:256712/1‑62 (MQ=255)

                                                                                                  tAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTAc                                               <  3:1119042/150‑1 (MQ=255)

                                                                                                  tAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTAc                                               >  4:609417/1‑150 (MQ=255)

                                                                                                    gCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGc                                                                                                           <  2:1475946/88‑1 (MQ=255)

                                                                                                    gCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGt                                             >  4:1208224/1‑150 (MQ=255)

                                                                                                    gCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGAACAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGt                                             >  3:719358/1‑150 (MQ=255)

                                                                                                     cTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTc                                            >  4:1324750/1‑150 (MQ=255)

                                                                                                       ggACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGc                                                                                                                 >  4:209834/1‑79 (MQ=255)

                                                                                                       ggACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGc                                                                                                                 <  3:209834/79‑1 (MQ=255)

                                                                                                       ggACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCg                                                                >  4:626777/1‑128 (MQ=255)

                                                                                                        gACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCa                                           >  1:1151017/1‑148 (MQ=255)

                                                                                                        gACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCa                                           <  2:1151017/148‑1 (MQ=255)

                                                                                                             tttCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTc                                                                      <  1:280896/116‑1 (MQ=255)

                                                                                                             tttCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCa                                                                                                                                    >  1:1179221/1‑54 (MQ=255)

                                                                                                             tttCCACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCa                                                                                                                                    <  2:1179221/54‑1 (MQ=255)

                                                                                                                ccACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCg                                                                                                                                              <  2:807720/41‑1 (MQ=255)

                                                                                                                ccACAACAGTCTCGGGTTTATACTTGGAGACAGCACTCCCg                                                                                                                                              >  1:807720/1‑41 (MQ=255)

                                                                                                                  acaacaGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCTGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTTAAGCCCAGCGGCt                               >  2:607538/1‑150 (MQ=255)

                                                                                                                    aacaGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATc                                                                 >  2:122781/1‑114 (MQ=255)

                                                                                                                      caGTCTCGGGTTTATACTTGGAGAAAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACGGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAg                           <  4:720561/150‑1 (MQ=255)

                                                                                                                       aGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGc                          >  3:245679/1‑150 (MQ=255)

                                                                                                                       aGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGc                          <  2:833642/150‑1 (MQ=255)

                                                                                                                       aGTCTCGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGc                          <  2:447755/150‑1 (MQ=255)

                                                                                                                          ctcGGGTTTATACTTGGAGACATCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGCCCt                       >  3:334240/1‑150 (MQ=255)

                                                                                                                           tcGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGCCCTg                      >  2:360334/1‑150 (MQ=255)

                                                                                                                           tcGGGTCTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGCCCTg                      >  1:1745925/1‑150 (MQ=255)

                                                                                                                            cGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATaa                                                   <  1:1268884/120‑1 (MQ=255)

                                                                                                                            cGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATaa                                                   >  2:1268884/1‑120 (MQ=255)

                                                                                                                            cGGGTTTATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGCCCTgg                     <  1:1353102/150‑1 (MQ=255)

                                                                                                                                tttATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGAt                                                     <  2:638421/114‑1 (MQ=255)

                                                                                                                                tttATACTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGAt                                                     >  1:638421/1‑114 (MQ=255)

                                                                                                                                  tataCTTGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGCCCTGGCagtta               <  1:907699/150‑1 (MQ=255)

                                                                                                                                       ttGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGCCCTGGCAGTTAGTTTa          <  4:774606/150‑1 (MQ=255)

                                                                                                                                       ttGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGCCCTGGCAGTTAGTTTa          >  2:987794/1‑150 (MQ=255)

                                                                                                                                       ttGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCt                                                                             >  2:1918697/1‑83 (MQ=255)

                                                                                                                                       ttGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCggg                                                              >  4:832223/1‑98 (MQ=255)

                                                                                                                                       ttGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCggg                                                              <  3:832223/98‑1 (MQ=255)

                                                                                                                                       ttGGAGACAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGCCCTGGCAGTTAGTTTa          >  1:1633702/1‑150 (MQ=255)

                                                                                                                                       ttGGAGACAGCACTCCCGGTCCCGAACCGCTCGGGGGGCTCAACGGCGACTGCAGGCGGGCTTAGGCCGGCGGCGGCCACGCTGGTCCTCGCCCCGGGGGCGCAGATAACTACGCCAAGCCCAGCGGCTTTCGCCCTGACAGTTAGgttt          >  4:323791/1‑149 (MQ=255)

                                                                                                                                          gagaCAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGTATGCGGGCtt                                                                                                 <  3:801735/60‑1 (MQ=255)

                                                                                                                                          gagaCAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGTATGCGGGCtt                                                                                                 >  4:801735/1‑60 (MQ=255)

                                                                                                                                            gaCAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGa                                                                                                               >  4:628240/1‑44 (MQ=255)

                                                                                                                                            gaCAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGa                                                                                                               <  3:628240/44‑1 (MQ=255)

                                                                                                                                             aCAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGCCCTGGCAGTTAGTTTAGCTAtt    <  3:1290561/150‑1 (MQ=255)

                                                                                                                                             aCAGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGc                                                                                                   <  4:72887/55‑1 (MQ=255)

                                                                                                                                               aGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGCCCTGGCAGTTAGTTTAGCTATTTc  >  2:282164/1‑150 (MQ=255)

                                                                                                                                               aGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGCCCTgg                     >  2:1497348/1‑131 (MQ=255)

                                                                                                                                               aGCACTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGCCCTgg                     <  1:1497348/131‑1 (MQ=255)

ACTCCCCTCGTGCCGAGTTTAAGCGCGGCTTCAACGTCCTCTCCGCTCTCAATACCCGCCCCAGTTATTACGGCGACGTCAGGGAAGTGCCTCCCCACTAGCTGGACAGTTTCCACAACAGTCTCGGGTTTATACTTGGAGACAGCCCTCCCGGTCCCGATCAGCTCGGGGGGCTCAACGGCGACTGCATGCGGGCTTAGGGCGGCGGCGGCAAGGCTGGTCCTCGGATCGGGGGCGCAGATAACTACGTCAAGCCCAGCGGCTTTAGCCCTGGCAGTTAGTTTAGCTATTTC  >  NC_000913_3_pae_tpiA/4110828‑4111120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`