New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2700550 =	100 (1.280)	16 (0.240)	12/208	4.9	15.7%	noncoding (31/77 nt)	ohsC	sRNA antisense regulator of shoB toxin
	?	NC_000913_3_pae_tpiA	2700601 =	87 (1.320)					intergenic (+5/+17)	ohsC/acpS	sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTAAAACTGGCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/2700713‑2700550 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggggttttactttttaaAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGA  >  NC_000913_3_pae_tpiA/2700601‑2700748                                                                                                                                                                                                                                                                                                                          TTAAAACTGGCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGG                                                                                                                                                                    >  1:537423/1‑150    AAACTGGCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTT                                                                                                                                                                 <  2:537423/150‑1     AACTGGCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTT                                                                                                                                                                >  3:226509/1‑150        TGGCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTAC                                                                                                                                                             >  2:657648/1‑150         GGCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACT                                                                                                                                                            <  1:657648/150‑1            GGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTT                                                                                                                                                         <  4:212677/150‑1            GGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTT                                                                                                                                                          >  4:508510/1‑149            GGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTT                                                                                                                                                          <  3:508510/149‑1                          TTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGG                                                                                                                                                                      >  3:248437/1‑123                          TTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGG                                                                                                                                                                      <  4:248437/123‑1                                                         GCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGG                                                                                                                                                                    <  3:553199/94‑1                                                         GCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGG                                                                                                                                                                    >  4:553199/1‑94                                                            GCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTT                                                                                                                                                           <  1:707355/100‑1                                                            GCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTT                                                                                                                                                           >  2:707355/1‑100                                                              ACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTT                                                                                                                                                                 >  3:292523/1‑92                                                              ACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTT                                                                                                                                                                 <  4:292523/92‑1                                                                                               AAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTCCATGCAT                                                                      >  2:867861/1‑150                                                                                                                 TTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAA                                                                                                                          >  1:475950/1‑80                                                                                                                 TTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAA                                                                                                                          <  2:475950/80‑1                                                                                                                       agGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAAT                                                                                                                      >  2:450350/3‑78                                                                                                                       AAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAAT                                                                                                                      <  1:450350/78‑1                                                                                                                        AGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCC                                             >  1:934932/1‑150                                                                                                                            AAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTT                                         >  2:826571/1‑150                                                                                                                            AAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACC                                                                                                                  <  3:2697/77‑1                                                                                                                            AAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACC                                                                                                                  >  4:2697/1‑77                                                                                                                            AAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCA                                                                                                                           >  3:413183/1‑68                                                                                                                            AAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCA                                                                                                                           <  4:413183/68‑1                                                                                                                              ACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTT                                       >  4:196005/1‑150                                                                                                                                     AACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCT                                >  4:320090/1‑150                                                                                                                                     AACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGC                                                                                             <  1:73900/89‑1                                                                                                                                     AACTGGTAAGGAACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGC                                                                                             >  2:73900/1‑89                                                                                                                                                 ACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCC                    <  3:196005/150‑1                                                                                                                                                   GGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAAT                                                                                                                      <  4:4751/50‑1                                                                                                                                                   GGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAAT                                                                                                                      >  3:4751/1‑50                                                                                                                                                    GGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCC                                                >  2:525611/1‑119                                                                                                                                                    GGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCC                                                <  1:525611/119‑1                                                                                                                                                       GTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCC              <  2:592356/150‑1                                                                                                                                                        TTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCG             >  4:414626/1‑150                                                                                                                                                        TTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCG             <  4:111457/150‑1                                                                                                                                                          TTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTG           >  1:132416/1‑150                                                                                                                                                           TACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGG          <  2:294999/150‑1                                                                                                                                                            ACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGC                                                                                     >  1:624645/1‑74                                                                                                                                                            ACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGC                                                                                     <  2:624645/74‑1                                                                                                                                                             CTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTT        <  2:274979/150‑1                                                                                                                                                              TTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTT       <  3:478125/150‑1                                                                                                                                                              TTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTT       >  3:378364/1‑150                                                                                                                                                              TTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTT                                                                  <  1:497348/91‑1                                                                                                                                                              TTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTT                                                                  >  2:497348/1‑91                                                                                                                                                                TTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGC     >  1:807821/1‑150                                                                                                                                                                 TTAAAGAGAACGGTCTTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGCC    <  3:33458/150‑1                                                                                                                                                                 TTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGCC    >  4:32591/1‑150                                                                                                                                                                 TTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCC                            <  3:283524/126‑1                                                                                                                                                                 TTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCC                            >  4:283524/1‑126                                                                                                                                                                 TTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCA                                                                                   <  2:343936/71‑1                                                                                                                                                                 TTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCA                                                                                   >  1:343936/1‑71                                                                                                                                                                   AAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGA  <  2:677773/150‑1                                                                                                                                                                    AAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTAC                                                                            >  2:337936/1‑75                                                                                                                                                                    AAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTAC                                                                            <  1:337936/75‑1                                                                                                                                                                                                                                                                                                                          TTAAAACTGGCGGAAAAGCTGGGCGTTGCAAATATGCATGTAACGCTGGCAGATGAGCGGCACTATGCTTGTGCCACGGTAATTATTGAAAGTTAAAAATAATACCGTTCTCTTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/2700713‑2700550 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggggttttactttttaaAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGA  >  NC_000913_3_pae_tpiA/2700601‑2700748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.