Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913_3_pae_tpiA	4,158,703	0	A	G	33.3%	75.9 / 55.5	64	T100A (ACA→GCA)	oxyR	oxidative and nitrosative stress transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base A (23/19);  new base G (10/11);  total (33/31)
Fisher's exact test for biased strand distribution p-value = 6.06e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01
Rejected as consensus: Frequency below/above cutoff threshold.

CAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTGGT  >  NC_000913_3_pae_tpiA/4158558‑4158851                                                                                                                                                  |                                                                                                                                                     cAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGt                                                                                                                                                  >  4:51943/1‑150 (MQ=255)   gCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTg                                                                                                                                                >  4:253344/1‑150 (MQ=255)            tgttgtTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTAcc                                                                                                                                       <  3:51943/150‑1 (MQ=255)             gttgttCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCt                                                                                                                                      >  2:722869/1‑150 (MQ=255)                    aCCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCg                                                                                                                                           <  4:149705/138‑1 (MQ=255)                    aCCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCg                                                                                                                                           >  3:149705/1‑138 (MQ=255)                      ccAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCa                                                                                                                             >  3:284738/1‑150 (MQ=255)                              gAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATcc                                                                                                                     <  4:324025/150‑1 (MQ=255)                                         gtggATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCat                                                                                                                            <  1:4226/132‑1 (MQ=255)                                         gtggATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCat                                                                                                                            >  2:4226/1‑132 (MQ=255)                                            gATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAg                                                                                                       >  4:489843/1‑150 (MQ=255)                                             aTCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATcc                                                                                                                     <  3:541596/135‑1 (MQ=255)                                             aTCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATcc                                                                                                                     >  4:541596/1‑135 (MQ=255)                                                aGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATCCCTAt                                                                                                                 <  3:524771/136‑1 (MQ=255)                                                aGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATCCCTAt                                                                                                                 >  4:524771/1‑136 (MQ=255)                                                  gcgcGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCttt                                                                                                 >  2:869229/1‑150 (MQ=255)                                                   cgcgTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTc                                                                                                <  2:457166/150‑1 (MQ=255)                                                     cgTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCa                                                                                              >  1:973128/1‑150 (MQ=255)                                                        aCCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAg                                                                                           >  1:61322/1‑150 (MQ=255)                                                          cGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCt                                                                                         <  1:927542/150‑1 (MQ=255)                                                               tgcGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGaaa                                                                                    <  4:173920/150‑1 (MQ=255)                                                                gcGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAAt                                                                                   >  2:666147/1‑150 (MQ=255)                                                                gcGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCCCAGTCGGACCGTTCCTGCTACCGCATATTATCCCTCTGCTGGACCAGAAATTTCAAACGCTGGAAAt                                                                                   <  2:441526/150‑1 (MQ=255)                                                                  gTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGt                                                                                 <  4:478894/150‑1 (MQ=255)                                                                  gTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGt                                                                                 <  3:489843/150‑1 (MQ=255)                                                                     aGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGa                                                                                                      <  1:566540/126‑1 (MQ=255)                                                                     aGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGa                                                                                                      >  2:566540/1‑126 (MQ=255)                                                                     aGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATc                                                                              <  3:253344/150‑1 (MQ=255)                                                                     aGGTGAAAGTCCTGAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATc                                                                              >  2:461117/1‑150 (MQ=255)                                                                      ggTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCTGACCTTTCCAAAGCTGGAAATGTATCt                                                                             <  1:722869/150‑1 (MQ=255)                                                                                 ttAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCatat                                                                                                                          <  1:320532/94‑1 (MQ=255)                                                                                 ttAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCatat                                                                                                                          >  2:320532/1‑94 (MQ=255)                                                                                   aaaGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGc                                                                                          >  3:162909/1‑124 (MQ=255)                                                                                   aaaGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGc                                                                                          <  4:162909/124‑1 (MQ=255)                                                                                     agagATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGAcc                                                                                                    <  2:731425/112‑1 (MQ=255)                                                                                     agagATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGAcc                                                                                                    >  1:731425/1‑112 (MQ=255)                                                                                     agagATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGAc                                                              >  2:611121/1‑150 (MQ=255)                                                                                         aTGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAACGCTGGAAATGTATCTGCATGAAGCACAGACccac                                                          >  1:457266/1‑150 (MQ=255)                                                                                         aTGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACccac                                                          >  3:439388/1‑150 (MQ=255)                                                                                           ggCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACccacca                                                        <  2:61322/150‑1 (MQ=255)                                                                                              aaGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGtt                                                     >  2:825526/1‑150 (MQ=255)                                                                                                  cagcagGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTg                                                 <  2:973128/150‑1 (MQ=255)                                                                                                   agcagGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTgg                                                >  2:576836/1‑150 (MQ=255)                                                                                                         gCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAAc                                          <  2:457266/150‑1 (MQ=255)                                                                                                          cGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCttt                                                                                                 >  3:565164/1‑94 (MQ=255)                                                                                                          cGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCttt                                                                                                 <  4:565164/94‑1 (MQ=255)                                                                                                           gagaCGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCata                                                                                                                           >  1:116829/1‑67 (MQ=255)                                                                                                           gagaCGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCata                                                                                                                           <  2:116829/67‑1 (MQ=255)                                                                                                                  tGTCCGGACCGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCg                                 <  1:666147/150‑1 (MQ=255)                                                                                                                  tGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCg                                 <  4:439388/150‑1 (MQ=255)                                                                                                                     ccGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCa                              >  3:329437/1‑150 (MQ=255)                                                                                                                       ggACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCaaa                            <  3:29131/150‑1 (MQ=255)                                                                                                                           cGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCaa                                                                                             >  1:850916/1‑81 (MQ=255)                                                                                                                           cGCTGCACATTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCaa                                                                                             <  2:850916/81‑1 (MQ=255)                                                                                                                           cGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCg                        >  2:501307/1‑150 (MQ=255)                                                                                                                              tGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCt                                                                             >  4:331776/1‑94 (MQ=255)                                                                                                                              tGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCt                                                                             <  3:331776/94‑1 (MQ=255)                                                                                                                               gCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACcca                                                           >  2:49878/1‑111 (MQ=255)                                                                                                                               gCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACcca                                                           <  1:49878/111‑1 (MQ=255)                                                                                                                                 acaTTGGTTTGATTCCCGCAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCg                  <  1:576836/150‑1 (MQ=255)                                                                                                                                        tttGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCa                                                                                                           >  2:595560/1‑54 (MQ=255)                                                                                                                                        tttGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCa                                                                                                           <  1:595560/54‑1 (MQ=255)                                                                                                                                               cccACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTg    >  1:9742/1‑150 (MQ=255)                                                                                                                                               cccACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTg    >  1:10057/1‑150 (MQ=255)                                                                                                                                                 cacaGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCAc                                                                                                          <  1:624928/46‑1 (MQ=255)                                                                                                                                                 cacaGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCAc                                                                                                          >  2:624928/1‑46 (MQ=255)                                                                                                                                                 cacaGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCa                                                                                                        <  4:200871/48‑1 (MQ=255)                                                                                                                                                 cacaGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCa                                                                                                        <  4:200860/48‑1 (MQ=255)                                                                                                                                                 cacaGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCa                                                                                                        >  3:200871/1‑48 (MQ=255)                                                                                                                                                 cacaGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCa                                                                                                        >  3:200860/1‑48 (MQ=255)                                                                                                                                                 cacaGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTGGt  <  2:10057/150‑1 (MQ=255)                                                                                                                                                 cacaGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTGGt  <  2:9742/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTGGT  >  NC_000913_3_pae_tpiA/4158558‑4158851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑