| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1062575 | NA (NA) | 16 (0.150) | 15/242 | 10.9 | 13.0% | coding (281/306 nt) | cbpM | modulator of CbpA co‑chaperone |
| ? | NC_000913_3_pae_tpiA | = 1062596 | 107 (0.980) | coding (260/306 nt) | cbpM | modulator of CbpA co‑chaperone | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1062423‑1062575‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaaACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGATGTGTGTTTGCCGGATGCGATGACGCATCTTAACCGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCG < NC_000913_3_pae_tpiA/1062596‑1062451 GCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGG > 4:350560/1‑150GCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGG > 4:375303/1‑150 GTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAA > 4:627910/1‑150 TTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAA > 3:692835/1‑150 TCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCCTGCTGC > 4:479741/1‑150 CATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCAGGAAAACCGCCTGCTGCGCCAG > 2:1097172/1‑150 TTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCCTGCTGCGCCAGCG < 3:479741/150‑1 ATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCCTGCTGCGCCAGCGGC < 1:889810/150‑1 GGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGG < 2:1120042/124‑1 GGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGG > 1:1120042/1‑124 GGCGCACTTGCCGGATGCGGCGTGAACTTCTTATCCGTCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCCGCAACCACACATCACGGATGAGCTACAAACCGGGAAAACCGCCTGCTGCGCCAGCGGCTT < 4:19504/150‑1 GCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAACCGCCTGCTGCGCCAGCGGCTTT > 2:750760/1‑150 GCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCAGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCCTGCTGCGCCAGCGGCTTT < 4:615185/150‑1 CGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAACCGCCTGCTGCGCCAGCGGCTTTC < 1:750760/150‑1 TTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCAGGAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGT < 1:1097172/150‑1 CGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCAGGAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGT < 1:1137296/150‑1 GTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGATGTGTGTTTGCCGGA < 1:758288/139‑1 GTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGATGTGTGTTTGCCGGA > 2:758288/1‑139 ATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAACCGCCTGCTGCGCCAGCGGCTTTCCC > 1:219457/1‑81 ATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAACCGCCTGCTGCGCCAGCGGCTTTCCC < 2:219457/81‑1 GTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCAGGAAAACCGCCTGCTGCGCCAGCGGCTTTC < 2:40817/75‑1 GTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCAGGAAAACCGCCTGCTGCGCCAGCGGCTTTC > 1:40817/1‑75 GGAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGATGTGTGTTTGCCGGATGCGATGACGCATCTTAACCGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGC < 2:458271/150‑1 GGAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGATGTGTGTTTGCCGGATGCGATGACGCATCTTAACCGGTCTA < 3:636146/93‑1 GGAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGATGTGTGTTTGCCGGATGCGATGACGCATCTTAACCGGTCTA > 4:636146/1‑93 GAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGATGTGTGTTTGCCGGATGCGATGACGCATCTTAACCGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCG > 2:680520/1‑150 GAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGATGTGTGTTTGCCGGATGCGATGACGCATCTTAACCGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCG > 1:991935/1‑150 GAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGATGTGTGTTTGCCGGATGCGATGACG > 2:146135/1‑76 GAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGATGTGTGTTTGCCGGATGCGATGACG < 1:146135/76‑1 GCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1062423‑1062575‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaaACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGATGTGTGTTTGCCGGATGCGATGACGCATCTTAACCGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCG < NC_000913_3_pae_tpiA/1062596‑1062451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |