| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 4527689 = | 4 (0.320) | 6 (0.510) | 6/244 | 0.7 | 64.0% | coding (208/432 nt) | sgcA | putative phosphotransferase enzyme IIA component |
| ? | NC_000913_3_pae_tpiA | 4527721 = | 3 (0.260) | coding (176/432 nt) | sgcA | putative phosphotransferase enzyme IIA component | |||||
CCGTGGAAATCGCCACCCGCCCGCTGGTAGCCTATGGTGCCGCGCAGCCATGCTACGTTAATGGGATCATCGAAAATACCCTTAACTGGGGGCCTTATTATCTGATAGCCCCAGGAATCGCCTTGCCTCACGCCCGACCAGAGCAAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/4527838‑4527689‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaaggcgATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCGA > NC_000913_3_pae_tpiA/4527721‑4527769 CCGTGGAAATCGCCACCCGCCCGCTGGTAGCCTATGGTGCCGCGCAGCCATGCTACGTTAATGGGATCATCGAAAATACCCTTAACTGGGGGCCTTATTATCTGATAGCCCCAGGAATCGCCTTGCCTCACGCCCGACCAGAGCAAGGCG > 3:45599/1‑150 GGGGGCCTTATTATCTGATAGCCCCAGGAATCGCCTTGCCTCACGCCCGACCAGAGCA < 3:77617/58‑1 GGGGGCCTTATTATCTGATAGCCCCAGGAATCGCCTTGCCTCACGCCCGACCAGAGCA > 4:77617/1‑58 CTTATTATCTGATAGCCCCAGGAATCGCCTTGCCTCACGCCCGACCAGAGCAAGGCGATTCCTGGGGCTATCAGATAATAAG > 3:72738/1‑82 CTTATTATCTGATAGCCCCAGGAATCGCCTTGCCTCACGCCCGACCAGAGCAAGGCGATTCCTGGGGCTATCAGATAATAAG < 4:72738/82‑1 CAGGAATCGCCTTGCCTCACGCCCGACCAGAGCAAGGCGATTCCTG > 3:24398/1‑46 CAGGAATCGCCTTGCCTCACGCCCGACCAGAGCAAGGCGATTCCTG < 4:24398/46‑1 CCTTGCCTCACGCCCGACCAGAGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCGA > 1:44447/1‑79 CCTTGCCTCACGCCCGACCAGAGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCGA < 2:44447/79‑1 CCGTGGAAATCGCCACCCGCCCGCTGGTAGCCTATGGTGCCGCGCAGCCATGCTACGTTAATGGGATCATCGAAAATACCCTTAACTGGGGGCCTTATTATCTGATAGCCCCAGGAATCGCCTTGCCTCACGCCCGACCAGAGCAAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/4527838‑4527689‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaaggcgATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCGA > NC_000913_3_pae_tpiA/4527721‑4527769 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |