New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 4150329	12 (0.960)	6 (0.510)	6/242	0.7	36.2%	intergenic (‑148/+34)	eptC/ppc	LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase
	?	NC_000913_3_pae_tpiA	= 4150339	10 (0.860)					intergenic (‑158/+24)	eptC/ppc	LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase

AAGAACCTGTCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGA  >  NC_000913_3_pae_tpiA/4150185‑4150467                                                                                                                                                 |                                                                                                                                           aaGAACCTGTCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCaa                                                                                                                                       >  3:28212/1‑150 (MQ=255)   gAACCTGTCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCaaaa                                                                                                                                     <  1:52122/150‑1 (MQ=255)                aaaaaTATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGtgcttttgc                                                                                                                                   >  1:50034‑M1/1‑130 (MQ=255)                aaaaaTATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGtgcttttgc                                                                                                                                   <  2:50034‑M1/139‑10 (MQ=255)                    atatCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCaga                                                                                                                    <  3:82900/150‑1 (MQ=255)                     tatCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGGGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGtgcttttgcgcgagggttttctgaa                                                                                                                   <  3:22390‑M1/150‑26 (MQ=255)                     tatCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCagaa                                                                                                                   <  2:25763/150‑1 (MQ=255)                                                  ggATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCAcgagggttttctgaaatacttctgttctaacaccctcgttttca                                                                                      >  4:28212‑M2/1‑106 (MQ=255)                                                                      aGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAg                                                                  >  1:145154/1‑150 (MQ=255)                                                                                         gacagaAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTc                                               <  2:145154/150‑1 (MQ=255)                                                                                              aaaTATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGAcgc                                          >  3:38697/1‑150 (MQ=255)                                                                                                      tGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGtgcttttgcgcgagggttttctgaaatacttctgttctaacaccctcgttttcaatatatttctgtctgcattttattcaaattctgaatataccttcagatatcc                                  >  4:28212‑M1/1‑44 (MQ=255)                                                                                                                             aaGTATTTCAGAAAACCCTCGtgcttttgcgcgagggttttc                                                                                                                       <  2:135435‑M1/42‑22 (MQ=255)                                                                                                                             aaGTATTTCAGAAAACCCTCGtgcttttgcgcgagggttttc                                                                                                                       >  1:135435‑M1/1‑21 (MQ=255)                                                                                                                             aaGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCt             >  1:108844/1‑148 (MQ=255)                                                                                                                             aaGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCt             <  2:108844/148‑1 (MQ=255)                                                                                                                                tATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCcttctt                  <  2:90858/140‑1 (MQ=255)                                                                                                                                tATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCcttctt                  >  1:90858/1‑140 (MQ=255)                                                                                                                                   ttCAGAAAACCCTCGCGCAAAAGCAcgagggttttctgaaatacttctgttctaacacccccgttttcaatatatttctgtctgcattttattcaaattctgaatataccttcagatatccttaaggaattgtcgttacattcggcgata     <  3:22390‑M2/150‑126 (MQ=255)                                                                                                                                      aGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCgggg  >  2:120707/1‑149 (MQ=255)                                                                                                                                       gAAAACCCTCGCGCAAAAGCAcgagggttttctgaaatactt                                                                                                             <  2:135435‑M2/42‑22 (MQ=255)                                                                                                                                       gAAAACCCTCGCGCAAAAGCAcgagggttttctgaaatactt                                                                                                             >  1:135435‑M2/1‑21 (MQ=255)                                                                                                                                                 |                                                                                                                                           AAGAACCTGTCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGA  >  NC_000913_3_pae_tpiA/4150185‑4150467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.