New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1343562	16 (1.280)	4 (0.350)	4/236	1.0	20.2%	intergenic (‑234/+35)	osmB/yciT	osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family
	?	NC_000913_3_pae_tpiA	= 1343568	17 (1.500)					intergenic (‑240/+29)	osmB/yciT	osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family

TATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCT  >  NC_000913_3_pae_tpiA/1343437‑1343694                                                                                                                              |                                                                                                                                     tataTCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCagtttggcaaatcatccgctctaa                                                                                                              <  4:81328‑M1/150‑25 (MQ=255)                                     gCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGa                                                                          <  2:120092/150‑1 (MQ=255)                                             taatTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACtg                                                                  >  3:6703/1‑150 (MQ=255)                                             taatTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACtg                                                                  >  3:6658/1‑150 (MQ=255)                                                    atatCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTgcaaatcatccgctctaagatgattcctggttgataattaagactatttacctgttattaacactctca                                                           >  2:139680‑M2/1‑81 (MQ=255)                                                      atCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGa                                                         <  1:15401/150‑1 (MQ=255)                                                       tCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGAt                                                        >  4:63541/1‑150 (MQ=255)                                                          tGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCagtttggcaaatcatccgctctaagatgattcctggttgataattaagactatttacctgttattaacactctcaagatat                                                     >  2:139680‑M1/1‑69 (MQ=255)                                                           gagaGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCAt                                                    <  4:56822/150‑1 (MQ=255)                                                                      taaCAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTgg                                         >  2:32688/1‑150 (MQ=255)                                                                       aaCAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGgc                                        >  2:90603/1‑150 (MQ=255)                                                                                    tCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGaa                           >  3:75312/1‑150 (MQ=255)                                                                                      ttAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATc                         >  4:63185/1‑150 (MQ=255)                                                                                       tAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCg                        <  1:90603/150‑1 (MQ=255)                                                                                        aaTTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCgg                       >  3:34083/1‑150 (MQ=255)                                                                                           tATCAACCAGGAATCATCTTAGAGCGGATGATTTGCagtttggcaaatcatcc                                                                                                                     <  2:72754‑M1/53‑18 (MQ=255)                                                                                           tATCAACCAGGAATCATCTTAGAGCGGATGATTTGCagtttggcaaatcatcc                                                                                                                     >  1:72754‑M1/1‑36 (MQ=255)                                                                                           tATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGt                                                                            >  1:107083/1‑94 (MQ=255)                                                                                           tATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGt                                                                            <  2:107083/94‑1 (MQ=255)                                                                                                             ttAGAGCGGATGATTTGCCAAACTgcaaatcatccgctctaagatgattcctggttgataattaagactatttacctgttattaacactctcaagatataaaattattatcagcgatataacaggaagtcattatcacctgcgtgatata  <  4:81328‑M2/150‑127 (MQ=255)                                                                                                               agagCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGa                                                                          <  3:34097/76‑1 (MQ=255)                                                                                                               agagCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGa                                                                          >  4:34097/1‑76 (MQ=255)                                                                                                                    ggATGATTTGCCAAACTgcaaatcatccgctctaagatgattcctggttgata                                                                                            <  2:72754‑M2/53‑37 (MQ=255)                                                                                                                    ggATGATTTGCCAAACTgcaaatcatccgctctaagatgattcctggttgata                                                                                            >  1:72754‑M2/1‑17 (MQ=255)                                                                                                                              |                                                                                                                                     TATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCT  >  NC_000913_3_pae_tpiA/1343437‑1343694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.