New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2146653	NA (NA)	3 (0.250)	3/246	1.3	NA	noncoding (54/84 nt)	REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_pae_tpiA	= 2146683	NA (NA)					noncoding (84/84 nt)	REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences

TCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAACGGCGGATTTGCGCCGGTGTCATTC  >  NC_000913_3_pae_tpiA/2146505‑2146801                                                                                                                                                     |                                                                                                                                                     tCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGg                                                                                                                                                     <  1:67942‑M1/150‑2 (MQ=255)                ggtgaTTGCCGATGCCCAACCGCTGGATTTGCTGGTGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTc                                                                                                                                      >  1:86106/1‑150 (MQ=255)                                cAACCGCTGGATTTGCTGGTGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGa                                                                                                                      <  1:46028/150‑1 (MQ=255)                                      cTGGATTTGCTGGTGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGgccggatgcggtgcgagcgccttatccggcctggggaa                                                                                                                <  1:131933‑M1/150‑39 (MQ=255)                                        ggATTTGCTGGTGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTc                                                                                                              <  2:86106/150‑1 (MQ=255)                                            ttGCTGGTGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGc                                                                                                          >  2:98505/1‑150 (MQ=255)                                                         gtagtTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGc                                                                                             >  3:79697/1‑150 (MQ=255)                                                                                 gCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGc                                                                     >  3:76232/1‑150 (MQ=255)                                                                                            cATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATa                                                          >  3:13578/1‑150 (MQ=255)                                                                                                     aTGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGgccggatgcggtgcgagcgccttatccggcctggggaatg                                                                                                              >  3:8879‑M1/1‑49 (MQ=255)                                                                                                     aTGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGgccggatgcggtgcgagcgccttatccggcctggggaatg                                                                                                              <  4:8879‑M1/89‑41 (MQ=255)                                                                                                                    gTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCg                                                                                   <  2:129260/101‑1 (MQ=255)                                                                                                                    gTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCg                                                                                   >  1:129260/1‑101 (MQ=255)                                                                                                                                cTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAAcggcg                      <  1:98505/150‑1 (MQ=255)                                                                                                                                  aCAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAACGGCGGa                    >  3:48271/1‑150 (MQ=255)                                                                                                                                  aCAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAACGGCGGa                    >  1:145327/1‑150 (MQ=255)                                                                                                                                     aaTCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAACGGCGGAttt                 >  3:31345/1‑150 (MQ=255)                                                                                                                                            cATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCctggggaatgagcgatttgtaggcatgataagacgcgttagcgtcgcat                                                                       >  3:8879‑M2/1‑40 (MQ=255)                                                                                                                                            cATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCctggggaatgagcgatttgtaggcatgataagacgcgttagcgtcgcat                                                                       <  4:8879‑M2/89‑50 (MQ=255)                                                                                                                                            cATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAACGGCGGATTTGCGCCgg          <  4:31345/150‑1 (MQ=255)                                                                                                                                              ttCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCctggggaatgagcgatttgtaggcatgataagacgcgttagcgtcgcatcaggcgatggggaagcacgcctcagttaatcgcgaaataactactattcaccagcaaatccag        <  1:131933‑M2/150‑113 (MQ=255)                                                                                                                                                    aGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAACGGCGGATTTGCGCCGGTGTCATTc  <  4:57062/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAACGCCAGGGCTTCCAGCGCTCGGCATAACGGCGGATTTGCGCCGGTGTCATTC  >  NC_000913_3_pae_tpiA/2146505‑2146801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.