New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2499276	12 (0.960)	4 (0.340)	4/244	1.1	24.8%	coding (606/1698 nt)	ypdA	sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system
	?	NC_000913_3_pae_tpiA	= 2499293	13 (1.110)					coding (623/1698 nt)	ypdA	sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system

AATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGAAAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTCAATAGCGAGTCATTACGCAAGGTCTGCGAAATTATCCGCGATGACATTCACGCCGATGCGGTGGCGATTACTAATACCGATCATGTGCTGGCCTA  >  NC_000913_3_pae_tpiA/2499186‑2499434                                                                                                            |                                                                                                                                              aaTCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGCGACCTTCCTCGAAGCCGAAAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCa                                                                                                     <  1:14143/150‑1 (MQ=255)    ctggtatCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGAAAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGt                                                                                                  <  2:15934/144‑1 (MQ=255)                                      ggCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGAAAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTCAATAGCGAGTCATTACGCAAGGTCTGCGCAAtt                                                                >  2:87007/1‑150 (MQ=255)                                         tttATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGAAAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTggcgctggcctctttttcgccctcaacgctttgcaccagaagcacaataaagccgatacagacgctaccgaggatcattgga                                                             <  3:60413‑M2/150‑83 (MQ=255)                                                     cTGGTGCAAAGCGTTGAGGGCGAAAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTCAATAGCGAGTCATTACGCAAGGTCTGCGAAATTATCCGCGATGACAtt                                                 <  1:23356/150‑1 (MQ=255)                                                       ggTGCAAAGCGTTGAGGGCGAAAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTCAATAGCGAGTCATTACGCAAGGTCTGCGAAATTATCCGCGATGACATTCa                                               <  1:108924/150‑1 (MQ=255)                                                                     aGGGCGAAAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTc                                                                                                 <  4:84454/86‑1 (MQ=255)                                                                     aGGGCGAAAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTc                                                                                                 >  3:84454/1‑86 (MQ=255)                                                                        gCGAAAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTggcctctttttcgccctcaacgctttgcaccagaagcacaataaagccgatacagacgctaccgaggatcattggaatgccgattttagagacgatatcgatccccaacgcgg                              <  2:49682‑M2/150‑114 (MQ=255)                                                                                gagGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTCAATAGCGAGTCATTACGCAAGGTCTGCGAAATTATCCGCGATGACATTCACGCCGATGCGGTGGCGATTACTAAt                      >  4:19831/1‑150 (MQ=255)                                                                                   gCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTCAATAGCGAGTCAtt                                                                                   >  2:56299/1‑86 (MQ=255)                                                                                   gCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTCAATAGCGAGTCAtt                                                                                   <  1:56299/86‑1 (MQ=255)                                                                                           cgcgcgGCAGGCCAAGCTggcgctggcctctttttcgccctcaa                                                                                                                     >  2:19113‑M2/1‑18 (MQ=255)                                                                                           cgcgcgGCAGGCCAAGCTggcgctggcctctttttcgccctcaa                                                                                                                     <  1:19113‑M2/44‑27 (MQ=255)                                                                                                    ggCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTCAATAGCGAGTCATTACGCAAGGTCTGCGAAATTATCCGCGATGACATTCACGCCGATGCGGTGGCGATTACTAATACCGATCATGTGCTGGCCTa  >  3:26630/1‑150 (MQ=255)                                                                                                     gCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTCAATAGCGAGTCATTACGCAAGGTCTGCGAAATTATCCGCGATGACATTCACGCCGATGCGGTGGCGATTACTAATACCGATc               >  2:70425/1‑136 (MQ=255)                                                                                                     gCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTCAATAGCGAGTCATTACGCAAGGTCTGCGAAATTATCCGCGATGACATTCACGCCGATGCGGTGGCGATTACTAATACCGATc               <  1:70425/136‑1 (MQ=255)                                                                                                            |                                                                                                                                              AATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGAAAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTCAATAGCGAGTCATTACGCAAGGTCTGCGAAATTATCCGCGATGACATTCACGCCGATGCGGTGGCGATTACTAATACCGATCATGTGCTGGCCTA  >  NC_000913_3_pae_tpiA/2499186‑2499434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.