Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_pae_tpiA	855541	855558	18	2 [0]	[1] 2	ldtB	L,D‑transpeptidase linking Lpp to murein

ACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTC  >  NC_000913_3_pae_tpiA/855494‑855540                                               | acagtacCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTc  <  1:34019/47‑1 (MQ=255) acagtacCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTc  >  2:34019/1‑47 (MQ=255)                                               | ACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTC  >  NC_000913_3_pae_tpiA/855494‑855540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑