New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1062575	NA (NA)	5 (0.130)	5/268	4.9	14.7%	coding (281/306 nt)	cbpM	modulator of CbpA co‑chaperone
	?	NC_000913_3_pae_tpiA	= 1062596	29 (0.750)					coding (260/306 nt)	cbpM	modulator of CbpA co‑chaperone
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGTCAAATACCCAGGTTGTTTCCTGGAT  >  NC_000913_3_pae_tpiA/1062450‑1062744                                                                                                                                                   |                                                                                                                                                     gcgcAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGttt                                                                                                                                                    <  2:43555/149‑1 (MQ=255)       ttGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGc                                                                                                                                              >  1:408813/1‑149 (MQ=255)       ttGCCGCATGCGGCGTCAAAGTCTTACCTGGCCCCCAGGAAATGTAATCTTTGTAGACCGGTTACGATGAGGCCCCGCATCCGGCATATACACGTCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGc                                                                                                                                              <  1:526717/149‑1 (MQ=255)            ggATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAg                                                                                                                                         <  2:698659/149‑1 (MQ=255)                     gTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGCGCTACAAACCGGGAAAGCCGCTAGCGCAGCAGGCGGTTTTCGTGATTCAGTTGAGCAat                                                                                                                                >  1:149733/1‑149 (MQ=255)                       gAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAatat                                                                                                                              <  2:163604/149‑1 (MQ=255)                        aaCGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATatc                                                                                                                             >  2:426859/1‑149 (MQ=255)                         aCGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGCTGAGCTACAAACCGGGAAACCCGCTGGCGCACCAGGCGGTTTTCCTGCTTCAGGTGCGCAATatca                                                                                                                            >  2:229871/1‑149 (MQ=255)                                 tCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACCCACATCCCCGATGAGCTCCAAACCGCGACAGCCGCTCGCCCACCAGCCGGCCTTCCTCCCTCCGGCGCGCCCTATCACCCATTaa                                                                                                                    >  2:97170/1‑149 (MQ=255)                                     gCCCACAGGAACTGTAATCTTTGTAGACCGGTGAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTc                                                                                                                <  1:141363/149‑1 (MQ=255)                                      cccACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCa                                                                                                               <  2:664432/149‑1 (MQ=255)                                                            tAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCa                                                                                         <  2:22991/149‑1 (MQ=255)                                                                   gTTAAGATGGGTCAGCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCaga                                                                                  <  1:219148/149‑1 (MQ=255)                                                                   gTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGTATGCGATACAAACCGGGAACGCCGCTCGCGCAGCAGGCGGTTTTCCTGCTCCATGTGCGCTATATCATCTATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCaga                                                                                  <  2:564044/149‑1 (MQ=255)                                                                   gTTAAGATGCGTCAGCGCATCCGGCAAACACAAATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCaga                                                                                  <  2:258275/149‑1 (MQ=255)                                                                        gATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAg                                                                             >  1:120890/1‑149 (MQ=255)                                                                         aTGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGt                                                                            <  2:120890/149‑1 (MQ=255)                                                                                    cATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAg                                                                 <  1:426859/149‑1 (MQ=255)                                                                                      tCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGa                                                                      <  2:360166/142‑1 (MQ=255)                                                                                      tCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGa                                                                      >  1:360166/1‑142 (MQ=255)                                                                                            aaaCACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCaa                                                                                                                                 >  2:97958/1‑77 (MQ=255)                                                                                            aaaCACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCaa                                                                                                                                 <  1:97958/77‑1 (MQ=255)                                                                                                acacaTCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACCCAGGCGTACcgcccg                                                     >  2:586984/1‑149 (MQ=255)                                                                                                  acaTCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAACCAGTTCTTGACGCAGGCGTACCGCGCGtt                                                   >  2:131997/1‑149 (MQ=255)                                                                                                       aCGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGcacc                                              <  1:40421/149‑1 (MQ=255)                                                                                                                        ggggAAAGCCGCTGGCGCGGCAGGCGGTTTTCGTGCTTCAGTTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGAGCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGgtc                             <  2:366219/148‑1 (MQ=255)                                                                                                                                ccGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGTCAAATa                     >  2:102713/1‑149 (MQ=255)                                                                                                                                               gCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCCGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGTCAAATACCCAGGTTGTTTCCt      >  2:55846/1‑149 (MQ=255)                                                                                                                                                  tttttCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGTCAAATACCCAGGTTGTTTCCTGGa   <  1:269406/148‑1 (MQ=255)                                                                                                                                                   ttttCCTGCTTCAGGTGCCCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCCGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGTCAAATACCCAGTTTGTTTCCTGGAt  <  2:701603/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGTCAAATACCCAGGTTGTTTCCTGGAT  >  NC_000913_3_pae_tpiA/1062450‑1062744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.