| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913_3_pae_tpiA | 1,197,502 | C→T | G11R (GGA→AGA) | ymfD ← | e14 prophage; putative SAM‑dependent methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 1,197,502 | 0 | C | T | 100.0% | 79.1 / NA | 26 | G11R (GGA→AGA) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (12/14); total (12/14) | |||||||||||
ACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTCCGGGATTTTTCCGACTTGACTTTCAGTTCTGGGCTTAACTGTCAAAGCAAAGATAATACCA > NC_000913_3_pae_tpiA/1197356‑1197638 | acgtaTTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGt < 1:706272/145‑1 (MQ=255) tcaGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGtt > 1:320803/1‑149 (MQ=255) gAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCaa < 2:5492/149‑1 (MQ=255) aaTATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCaaa > 2:279212/1‑149 (MQ=255) aatttttCGGCATCGAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTTGAGTGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTa < 1:240242/146‑1 (MQ=255) taaagtaGCAAAAATCAAGTGAGTGTTCTTCTTACTCAATGCTTGTATGATTCGCGCAAAGAAACCAAGAGGGGATCGTA‑GAGGCTGTTTCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCAtt < 2:181172/143‑1 (MQ=255) gCCAAAATCAAGGGCGTGGCCATTTTTCTCAATGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAAttca < 2:454646/149‑3 (MQ=255) ccAAAATCAAGGGCGTGGCCATTTTTCTCAATGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAAt < 1:229639/149‑1 (MQ=255) aaaaTCAAGGGCGTGGCCATTTTTCTCAATGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCata > 1:89878/1‑115 (MQ=255) aaaaTCAAGGGCGTGGCCATTTTTCTCAATGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCata < 2:89878/115‑1 (MQ=255) ggCCATTTTTCTCAATACTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATCAAATTAATGTTATTTTTAGTGaaa > 2:67182/1‑149 (MQ=255) ctcAATGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCtttta < 1:656370/149‑1 (MQ=255) cAATGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATCTTATAGTTACAAGCAAGTACCATTCCTTTAATGTTTTTGTTGTTGACAAATTCtttgatt < 2:425053/149‑1 (MQ=255) aaTGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTAcc < 1:633341/109‑1 (MQ=255) aaTGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTAcc > 2:633341/1‑109 (MQ=255) cTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATc > 1:626726/1‑149 (MQ=255) gCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTCCGGGATTTTTc > 1:405145/1‑149 (MQ=255) gCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAACTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTTCGGGATTTTTc > 2:630455/1‑149 (MQ=255) gCAAAGATACTTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGTGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTCCGGGATTTTTc < 2:385873/149‑1 (MQ=255) aaaGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCAt < 2:420819/91‑1 (MQ=255) aaaGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCAt > 1:420819/1‑91 (MQ=255) aGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTCCGGGATTTTTCCgac < 2:38474/149‑1 (MQ=255) tAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTCCGGGATTTTTCCgacttgactt > 1:10925/1‑149 (MQ=255) cGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTCCGGGATTTTTCCGACTTGACTTTCAGTTCTgg < 2:10925/149‑1 (MQ=255) ttCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTCCGGGATTTTTCCGACTTGACTTTCAGTTTTGGGCTTAACTTTcaaagcaaa > 2:696576/1‑149 (MQ=255) gAATATTAACTCTGTGCATATTATAGTTAAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTGTTATTTTATCGTCCGGGGTTTTTCCGACTTGACTTTCAGTTCTTGTCTTAAGTATACAAGCAACAATAATAcaa > 2:299258/1‑147 (MQ=255) | ACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGG‑TTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTCCGGGATTTTTCCGACTTGACTTTCAGTTCTGGGCTTAACTGTCAAAGCAAAGATAATACCA > NC_000913_3_pae_tpiA/1197356‑1197638 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |