mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 259 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 225281 | NA (NA) | 57 (0.290) | 41/232 | 10.7 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3943635 | NA (NA) | 43 (0.220) | 32/228 | 13.2 | 36.9% | intergenic (+125/‑69) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_tpiA | = 4037446 | 78 (0.380) | intergenic (+111/‑73) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4040683 | 182 (0.880) | 94 (0.460) | 32/238 | 13.9 | 32.7% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_tpiA | = 4213078 | 208 (1.020) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 382211 | NA (NA) | 43 (0.220) | 30/232 | 14.2 | NA | coding (538/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_pae_tpiA | = 382218 | NA (NA) | coding (545/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1552077 | 234 (1.130) | 35 (0.190) | 26/218 | 14.7 | 14.5% | noncoding (7/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_tpiA | = 1552093 | 203 (1.090) | noncoding (23/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_pae_tpiA | 1097372 = | NA (NA) | 33 (0.160) | 29/236 | 14.8 | 21.7% | intergenic (+543/+193) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_tpiA | 1097531 = | 122 (0.590) | intergenic (+702/+34) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_pae_tpiA | 1097172 = | NA (NA) | 31 (0.150) | 28/236 | 15.2 | 18.7% | intergenic (+343/+393) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_tpiA | 1097188 = | 138 (0.670) | intergenic (+359/+377) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_pae_tpiA | 1096988 = | 190 (0.920) | 31 (0.150) | 28/236 | 15.2 | 14.3% | intergenic (+159/+577) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_tpiA | 1097191 = | NA (NA) | intergenic (+362/+374) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_pae_tpiA | = 225685 | 233 (1.130) | 34 (0.170) | 27/230 | 15.2 | 13.3% | intergenic (+110/‑74) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | = 3943636 | NA (NA) | intergenic (+126/‑68) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 59280 = | 204 (0.990) | 27 (0.150) | 23/208 | 15.2 | 12.9% | intergenic (+1/+407) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| ? | NC_000913_3_pae_tpiA | 59320 = | 188 (1.060) | intergenic (+41/+367) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent | |||||