New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1293179 =	66 (0.830)	3 (0.040)	3/272	NT	4.4%	intergenic (‑257/‑348)	hns/tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
	?	NC_000913_3_pae_tpiA	2101750 =	NA (NA)					intergenic (‑6/+145)	wbbL/insH1	pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator
Rejected: Frequency below/above cutoff threshold.

TTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTT  >  NC_000913_3_pae_tpiA/1293031‑1293324                                                                                                                                                     |                                                                                                                                                  ttggtgCCGCTAATCAATATCTTTTGATAAAATTAGCCAGAAAATACGCGGCATATAGCCCTATTTACACCGATGATTTCGCTGCACGTGAGGTTAAAACGTCCTGATTCATGTCACATTTTATGGGGAGATTATTGTAGGCTgacgac                                                                                                                                                   <  2:115090/146‑1 (MQ=255) taaaaactggggataacgccttaactggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttcgccgcttattcgcaccttcc                                                                                                                                                   <  2:312424‑M1/1‑1 (MQ=255) taaaaactggggataacgccttaaattgcgaagacacgatctagagagtctaattcaaggcatttacgggagaaaaaatcggctcaaacgtgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                                                                   >  2:861939‑M1/149‑149 (MQ=255) taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattctaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                                                                   <  2:1007553‑M1/1‑1 (MQ=255) taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcagggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                                                                   <  1:454100‑M1/1‑1 (MQ=255) taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                                                                   <  1:1114204‑M1/1‑1 (MQ=255) taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                                                                   <  1:473564‑M1/1‑1 (MQ=255) taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                                                                   <  1:131672‑M1/1‑1 (MQ=255) taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                                                                   >  1:713678‑M1/149‑149 (MQ=255) taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactaagtcagccgagaagcaattccccgcttattcgcaccttcc                                                                                                                                                   <  2:174905‑M1/1‑1 (MQ=255) taaaaactggggataacgccttaaatggcgaagaaacggtcgaaataggctgatacaggacatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                                                                   <  1:1109509‑M1/1‑1 (MQ=255) taaaaactggggataacgccttaaatggcgaagaaacggactaaataggatgagtcaaggcatttacgggagacaaaagcggctcaaacatgaagaaatgaaatgactgagttagcggagaagaatttccccgctcagacgccccttcc                                                                                                                                                   <  2:1141625‑M1/1‑1 (MQ=255) aaaaacctggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                                                                   >  1:239654‑M1/149‑149 (MQ=255)  cattcccgctAATAAATACACTTTAATAAGAGTAGACAAAAAATACACGGAATAAATCCCTAATCACACCGATGATTACTCAGCACGTGAGTTTAAAACTTCCTGATTCATGTCACATTTTATGGGAAGATTATCGTAGGCTGACGAcc                                                                                                                                                  <  2:189668/144‑1 (MQ=255)  aaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                  >  1:894612‑M1/148‑149 (MQ=255)  aaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaacctccgcatgaggcgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                  >  1:344654‑M1/148‑149 (MQ=255)  aaaaactggggataacgccgtaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgacaacctctctgttgaagaatttccccgcttattcgcaccttccc                                                                                                                                                  >  1:344634‑M1/148‑149 (MQ=255)   aaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCt                                                                                                                                                 <  1:254995‑M1/3‑1 (MQ=255)       ccgccACTAACTATCTCGTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCa                                                                                                                                             <  2:1283717/149‑1 (MQ=255)       ccgccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCa                                                                                                                                             <  1:170860/149‑1 (MQ=255)       cagctaattaataTCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCa                                                                                                                                             <  2:861255/144‑1 (MQ=255)        tggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccctttaag                                                                                                                                            <  2:1334450‑M1/8‑4 (MQ=255)          ccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGtc                                                                                                                                          <  2:513969/149‑1 (MQ=255)           cAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCtttggaagg                                                                                                                                         <  1:1366398/149‑7 (MQ=255)            aataaataTCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGtctt                                                                                                                                        >  2:470534/1‑149 (MQ=255)              taaataTCTTTTCATAAAATTAGAGAAAATATGCGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGtcttct                                                                                                                                      >  2:1375217/1‑149 (MQ=255)                 atatCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTa                                                                                                                                   <  2:437068/149‑1 (MQ=255)                   atCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTAtt                                                                                                                                 >  1:73436/1‑149 (MQ=255)                    tCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTa                                                                                                                                >  2:444637/1‑149 (MQ=255)                    tCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTa                                                                                                                                <  1:907163/149‑1 (MQ=255)                      ttttCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACTCCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGt                                                                                                                              <  2:605636/149‑1 (MQ=255)                                       aGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTc                                                                                                             >  2:541646/1‑149 (MQ=255)                                           aaGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAATCTTCCTGATTCATTTCACATTTTATGGGGAGATTATCGTAGCCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTa                                                                                                         <  2:985600/149‑1 (MQ=255)                                                     atatAGCCCTATTTACACCGATTATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAat                                                                                               <  1:1269686/149‑1 (MQ=255)                                                      ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTTTCAGCCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGcgaagg                                                                                              <  2:125418‑M1/54‑3 (MQ=255)                                                      tataGCCCTATTTACACCGATGATTTCGCAGCACGTGATGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACGTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGaacg                                                                                              >  2:1018640/1‑147 (MQ=255)                                                        taGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgat                                                                                            <  1:975938/149‑1 (MQ=255)                                                           cccTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAACAAATAATTaa                                                                                         <  2:607512/149‑1 (MQ=255)                                                             cTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGaaaa                                                                                       <  1:1313082/149‑1 (MQ=255)                                                             cTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAATTGTGTTTACGGGAATTCCCTTTTAAGCGAATGATGaaaa                                                                                       >  2:351278/1‑149 (MQ=255)                                                              tATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGCAGAATGAAAAg                                                                                      >  2:946538/1‑149 (MQ=255)                                                              tATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATAGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAACCAAACGATGaagcg                                                                                      >  2:372757/1‑146 (MQ=255)                                                                tttACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTATATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTa                                                                                    <  1:987598/149‑1 (MQ=255)                                                                tttACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCCGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTa                                                                                    <  2:990507/149‑1 (MQ=255)                                                                cttACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTGCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTa                                                                                    <  1:613649/148‑1 (MQ=255)                                                                 ttACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAg                                                                                   >  1:6784/1‑149 (MQ=255)                                                                 ttACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTAGGGGGAGATTATCGTAGACTGACGACCTTTCAGTCTTCTGTATGAGTTCTGTGTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAg                                                                                   <  2:1370738/149‑1 (MQ=255)                                                                   acacCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGaa                                                                                 <  1:1081091/149‑1 (MQ=255)                                                                   acacCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGaa                                                                                 <  1:500400/149‑1 (MQ=255)                                                                     tctgatgatTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGTAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACa                                                                               <  2:72395/146‑1 (MQ=255)                                                                       cGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGt                                                                             <  1:1155057/149‑1 (MQ=255)                                                                         atgatTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCg                                                                           <  1:379054/149‑1 (MQ=255)                                                                          tgatTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGc                                                                          <  1:444637/149‑1 (MQ=255)                                                                            ttttCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCaa                                                                        <  1:126005/148‑1 (MQ=255)                                                                            atTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACATTCGCaa                                                                        >  2:826598/1‑149 (MQ=255)                                                                             tttCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAAt                                                                       >  1:116085/1‑149 (MQ=255)                                                                              ttCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATa                                                                      >  1:1100044/1‑149 (MQ=255)                                                                                   agcaCGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGc                                                                 >  2:727767/1‑149 (MQ=255)                                                                                            ggTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTa                                                        <  2:618310/149‑1 (MQ=255)                                                                                             gTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACGGGCGCAATAAGAGCATGGACTTAg                                                       <  1:737083/149‑1 (MQ=255)                                                                                               tAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGCCGACATTGATCGCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTa                                                     <  1:333086/149‑1 (MQ=255)                                                                                                 aaaCTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTAtt                                                   >  1:83493/1‑149 (MQ=255)                                                                                                    gaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCa                                                >  1:427948‑M1/50‑149 (MQ=255)                                                                                                    cTTCCTGATTCATGTCACACTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATTAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCa                                                <  2:1229167/149‑1 (MQ=255)                                                                                                     ttCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCAc                                               >  2:1163573/1‑149 (MQ=255)                                                                                                       ccTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTa                                             >  1:947874/1‑149 (MQ=255)                                                                                                        cTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTAt                                            <  1:991092/149‑1 (MQ=255)                                                                                                        cTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTAt                                            <  1:1378945/149‑1 (MQ=255)                                                                                                         tGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTAtc                                           <  2:331814/149‑1 (MQ=255)                                                                                                         tGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTAtc                                           >  1:415136/1‑149 (MQ=255)                                                                                                           aTTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTAtctc                                         >  2:1199090/1‑149 (MQ=255)                                                                                                              cATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTg                                      <  1:884282/149‑1 (MQ=255)                                                                                                              cATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTg                                      <  1:541646/149‑1 (MQ=255)                                                                                                                tGTCACATTTTATGGGGAGCTTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGa                                    <  1:318911/149‑1 (MQ=255)                                                                                                                tGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGa                                    >  2:1033472/1‑149 (MQ=255)                                                                                                                  tCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAgg                                  >  2:649377/1‑149 (MQ=255)                                                                                                                  gcctcggttATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATATGCTGGAgg                                  >  2:889990/8‑149 (MQ=255)                                                                                                                     caTTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGaaa                                                                                        <  2:352573/92‑1 (MQ=255)                                                                                                                     caTTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGaaa                                                                                        >  1:352573/1‑92 (MQ=255)                                                                                                                     caTTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGAAGGTCa                               >  2:1218417/1‑149 (MQ=255)                                                                                                                       ttttATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGATCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAAc                             >  2:1062986/1‑149 (MQ=255)                                                                                                                        tttATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACa                            <  2:1162003/149‑1 (MQ=255)                                                                                                                           aTGGGGACATTAGCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACagag                         <  2:1163727/149‑1 (MQ=255)                                                                                                                             ggggAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAggg                       <  2:73436/149‑1 (MQ=255)                                                                                                                               ggAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCt                     <  2:891920/149‑1 (MQ=255)                                                                                                                                            ggCTGACGACCTTTCAGTCTTCTGTATTAGTTGCGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGGGCATGGACTTAGTATTGCACTATCTCCTGGAGGCCAACAGAGGGCTATTACTTGCGCaa        <  1:475863/149‑1 (MQ=255)                                                                                                                                               tGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCAATATCTCCTGGAGGTCAACAGAGGTCTATTACTTGCGCAAAAg     >  2:385295/1‑149 (MQ=255)                                                                                                                                               tGACGACCTTTCAGTCTTCTGTAGTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAg     >  1:1222430/1‑149 (MQ=255)                                                                                                                                               accttcCCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCACTAAAATCATTGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAg     >  1:1334450‑M1/7‑149 (MQ=255)                                                                                                                                                  cgacCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGtt  >  2:318167/1‑149 (MQ=255)                                                                                                                                                   gacCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGaaaa                                                                                       >  1:227474/1‑63 (MQ=255)                                                                                                                                                   gacCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGaaaa                                                                                       <  2:227474/63‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  TTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTT  >  NC_000913_3_pae_tpiA/1293031‑1293324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.