Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913_3_pae_tpiA 257,908 Δ776 bp 100% [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_pae_tpiA 257908 258683 776 67 [0] [0] 67 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 2579070 (0.000)59 (0.790) 46/258 NT 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913_3_pae_tpiA 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

CGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAAT  >  NC_000913_3_pae_tpiA/257760‑258054
                                                                                                                                                   |                                                                                                                                                   
cGCTTGTGTTAAAAATTTGCTAAATGTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGATGCCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTTAAGGTAa                                                                                                                                                    <  1:1020440‑M1/149‑2 (MQ=255)
       gtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaa                                                                                                                                             <  1:1313186‑M1/149‑9 (MQ=255)
              aTTTGCGAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGATGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                      <  1:1186723‑M1/149‑16 (MQ=255)
                    tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattct                                                                                                                                >  1:960228‑M1/1‑128 (MQ=255)
                       aTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt                                                                                                                             >  1:1173147‑M1/1‑125 (MQ=255)
                             ccAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt                                                                                                                       >  1:675776‑M1/1‑119 (MQ=255)
                              cAATTTGGTAAAACAGTTGCATCACAACAGGAGATCATATTGATTTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattg                                                                                                                      >  1:1408085‑M1/1‑118 (MQ=255)
                                aTTTGGTAAAACAGTTGTATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc                                                                                                                    <  2:369195‑M1/149‑34 (MQ=255)
                                aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTCagtgcaaagataatcgattgtttttcgatcgtc                                                                                                                    >  1:88422‑M1/1‑116 (MQ=255)
                                aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc                                                                                                                    <  2:1032713‑M1/149‑34 (MQ=255)
                                 tttGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct                                                                                                                   >  2:66341‑M1/1‑115 (MQ=255)
                                     gTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGAGCAAAAAATTTACCGCACTAGGCCCGGATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                                                                                                               >  1:906240‑M1/1‑111 (MQ=255)
                                      tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctg                                                                                                              >  2:1133733‑M1/1‑110 (MQ=255)
                                        aaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta                                                                                                            >  1:946865‑M1/1‑108 (MQ=255)
                                          aCAGTTGCATCACAACAGGAGATAGCAATGACGTTAACTAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagctaatcgatgctttttcgattgtctggctgtatg                                                                                                          >  1:1228566‑M1/1‑106 (MQ=255)
                                           cAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatga                                                                                                         <  1:782343‑M1/149‑45 (MQ=255)
                                            aGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGGATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatagtctggctgtatgcg                                                                                                        >  2:290160‑M1/1‑104 (MQ=255)
                                                 cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                                   <  1:66341‑M1/149‑51 (MQ=255)
                                                   tCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgt                                                                                                 <  1:1216006‑M1/149‑53 (MQ=255)
                                                       aatagtggatagcaatGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaa                                                                                             <  2:355550‑M1/142‑57 (MQ=255)
                                                       aacaGGAGATAGCAATGACGTTACCGAGTGAACACCCGAAGAGCAGATTGATCAAAAAATCTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttaccggattgtctggctgtatgcgtcaacgtgaaa                                                                                             <  2:673343‑M1/149‑57 (MQ=255)
                                                          aGGAGATAGCGATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccg                                                                                          <  1:254471‑M1/149‑60 (MQ=255)
                                                                tAGCAATGACGTTACCGAGTGGACCCCAGAGGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccg                                                                                    >  1:347819‑M1/1‑84 (MQ=255)
                                                                 aGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgg                                                                                   >  2:136839‑M1/1‑83 (MQ=255)
                                                                   cAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                                 <  1:526451‑M1/149‑69 (MQ=255)
                                                                   cAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                                 <  1:1416799‑M1/149‑69 (MQ=255)
                                                                   cAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                                 <  1:1052145‑M1/149‑69 (MQ=255)
                                                                    aaTTACGTTACCGAGTGGACACCCGAAGAGCAGATTTGTCAAAAAATTTACCGCACTAGGCCCGGATATTCTTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtaaacgtgaaaccggcaccggaag                                                                                >  2:1252826‑M1/1‑80 (MQ=255)
                                                                    aaTGACGTTACCGAGTGGACACCCGAAGAGAAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacacgccacggaag                                                                                >  2:1172952‑M1/1‑80 (MQ=255)
                                                                    aaTGACCTTACCGAGTGAACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGTCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaag                                                                                <  1:479204‑M1/149‑70 (MQ=255)
                                                                       gACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgc                                                                             <  2:905962‑M1/149‑73 (MQ=255)
                                                                        aCGTTACCGAGTGGACATCCGAAGAGTATATTGATCAAAAAATTTACCGCACTAGGCCCGTTTATTCGTGAAGGTAagtgcaaagataaccgcttcttctatgtttttctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcg                                                                            <  2:237688‑M1/149‑74 (MQ=255)
                                                                         cGTTACCTATTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                           <  2:1206572‑M1/149‑75 (MQ=255)
                                                                            tACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAACTTGACCTCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaa                                                                        >  1:1408236‑M1/1‑72 (MQ=255)
                                                                              ccGATTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaatt                                                                      <  1:57210‑M1/149‑80 (MQ=255)
                                                                                  gtgtACACCCGAAGAGGAGATGGACCAAAAAAGTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtcgggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgg                                                                  <  2:339380‑M1/149‑84 (MQ=255)
                                                                                   tGGACACCCGCAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggg                                                                 >  1:210639‑M1/1‑65 (MQ=255)
                                                                                   tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggg                                                                 >  1:1280882‑M1/1‑65 (MQ=255)
                                                                                   tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggg                                                                 >  1:83277‑M1/1‑65 (MQ=255)
                                                                                    ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg                                                                <  2:438702‑M1/149‑86 (MQ=255)
                                                                                         cccTAAGATCAAATGGATCAAAAAAGTTCCCGCACCAGGCCCGTATATTTGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggt                                                           <  1:212762‑M1/149‑91 (MQ=255)
                                                                                          ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg                                                          >  1:1345912‑M1/1‑58 (MQ=255)
                                                                                            gAAGAGCAGATTGATCAAAAAATTTNCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaacccggcactggaagtgcgtgaattctggggctggtgga                                                        <  1:940498‑M1/149‑94 (MQ=255)
                                                                                              agagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatg                                                      <  1:1076799‑M1/149‑96 (MQ=255)
                                                                                               gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggcctggtggatgg                                                     >  1:1351883‑M1/1‑53 (MQ=255)
                                                                                                agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgga                                                    >  1:143343‑M1/1‑52 (MQ=255)
                                                                                                     aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgg                                               <  2:26361‑M1/149‑103 (MQ=255)
                                                                                                         aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagc                                           >  1:1194273‑M1/1‑43 (MQ=255)
                                                                                                            aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtctgcgacaacgtgaaacgggcaacggaagtgcgtgaattcaggggtgtgtggatggatcgtgatgcgca                                        >  2:125831‑M1/1‑40 (MQ=255)
                                                                                                            aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                        >  2:864709‑M1/1‑40 (MQ=255)
                                                                                                            aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagggcgtggattctggggctgggtgatggagctggaagcgca                                        >  1:431515‑M1/1‑40 (MQ=255)
                                                                                                            aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccagcaccggcagtgcggaaattctggggttggtggatggtgcgggaagcgcg                                        >  2:631711‑M1/1‑40 (MQ=255)
                                                                                                            aaaaaaTTCACCGCACCAGGCCCGTATACTCCTGAACGTAagtgcaaagacaatcgattctctttcgattgtctcgccgtatccgtcaacgtgaaaccggcacccgaagtgcgtgaattctggggctggtggatggagctggaagcgca                                        <  2:395461‑M1/149‑110 (MQ=255)
                                                                                                                  tttACTGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggtagtgcgtgaattttggggctggtggatggagctggaagcgcaggaatg                                  >  2:1307323‑M1/1‑34 (MQ=255)
                                                                                                                               gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctac                     >  1:4768‑M1/1‑21 (MQ=255)
                                                                                                                               gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctac                     >  1:222627‑M1/1‑21 (MQ=255)
                                                                                                                                 ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacag                   >  1:436027‑M1/1‑19 (MQ=255)
                                                                                                                                 ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaataccgttttacctacag                   >  2:390135‑M1/1‑19 (MQ=255)
                                                                                                                                   gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctcgctgtatgcgtcaacgtgaaaccggcacccgaagtgcgtgaattctggggctgagggatggagctggaagcgtaggaattccgttttgactacagtt                 >  1:814389‑M1/1‑17 (MQ=255)
                                                                                                                                      tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacc              >  2:248925‑M1/1‑14 (MQ=255)
                                                                                                                                       atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacca             >  1:159818‑M1/1‑13 (MQ=255)
                                                                                                                                       atTCGGGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacca             <  1:629193‑M1/149‑137 (MQ=255)
                                                                                                                                            ttaaggTAagtgtaaagttaatcgattcttttttgtttgtttgggtgtatgcgttaacgtgaaaccgggaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttatctacagttatcagtttg        <  2:1154638‑M1/147‑142 (MQ=255)
                                                                                                                                            tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg        <  2:127422‑M1/149‑142 (MQ=255)
                                                                                                                                              aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttgccagtttggt      >  1:349721‑M1/1‑6 (MQ=255)
                                                                                                                                                ggTAagtgcaaaaataatcgattctttttcgattgtatggctgtatgcgtcaacgtgaaaccggcaccggatgtgcgtgaattctgggtctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttgtgct    >  2:776859‑M1/1‑4 (MQ=255)
                                                                                                                                                  tAagtgcaaagataatcgtttctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgt  <  2:1337766‑M1/149‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
CGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAAT  >  NC_000913_3_pae_tpiA/257760‑258054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: