New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	59280 =	120 (0.970)	28 (0.260)	22/226	8.6	21.8%	intergenic (+1/+407)	yabP/rluA	pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
	?	NC_000913_3_pae_tpiA	59320 =	97 (0.910)					intergenic (+41/+367)	yabP/rluA	pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.

TAATTAGCAGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/59445‑59280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccccttcaaccttagcAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATCAGAA  >  NC_000913_3_pae_tpiA/59320‑59466                                                                                                                                                                                                                                                                                                                           TAATTAGCAGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAG                                                                                                                                                                     <  4:321446/150‑1  AATTAGCAGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGC                                                                                                                                                                    <  2:462792/150‑1  AATTAGCAGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGC                                                                                                                                                                    >  1:439788/1‑150  AATTAGCAGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGC                                                                                                                                                                    <  2:318058/150‑1    TTAGCAGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCC                                                                                                                                                                  <  3:864639/150‑1    TTAGCAGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCC                                                                                                                                                                  <  4:139935/150‑1        CAGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGATATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTC                                                                                                                                                              <  2:896377/150‑1         AGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCA                                                                                                                                                             <  3:467052/150‑1         AGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCA                                                                                                                                                             <  1:404285/150‑1           TCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCCCGCTACTGCTAAGGTTGAGGGCGCGTTCCAGCCCCTTCAAC                                                                                                                                                           <  2:299485/150‑1           TCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTACAGGGGCGTTCCAGCCCCTTCAAC                                                                                                                                                           <  2:205622/150‑1               GTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTA                                                                                                                                                       >  2:250636/1‑150                                 GGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGC                                                                                                                                                                    <  1:171642/119‑1                                 GGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGC                                                                                                                                                                    >  2:171642/1‑119                                                                            CTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATT                                                                                                                            <  1:333660/116‑1                                                                            CTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATT                                                                                                                            >  2:333660/1‑116                                                                                                CTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGC                                                                      >  3:170249/1‑150                                                                                                                                    GGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAA                                                                                                                       >  2:247106/1‑65                                                                                                                                    GGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAA                                                                                                                       <  1:247106/65‑1                                                                                                                                     GTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACAC                                                               >  2:384482/1‑120                                                                                                                                     GTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACAC                                                               <  1:384482/120‑1                                                                                                                                     GTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCG                                                                         <  2:794603/110‑1                                                                                                                                     GTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCG                                                                         >  1:794603/1‑110                                                                                                                                     GTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGA                                                                                                   <  2:1027569/84‑1                                                                                                                                     GTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGA                                                                                                   >  1:1027569/1‑84                                                                                                                                     GTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGAT                                                                                                           >  4:805613/1‑76                                                                                                                                     GTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGAT                                                                                                           <  3:805613/76‑1                                                                                                                                      TTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGCTGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGAC                                >  3:675532/1‑150                                                                                                                                      TTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAG                                                                                                  >  2:1367163/1‑84                                                                                                                                      TTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAG                                                                                                  <  1:1367163/84‑1                                                                                                                                       TGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTC                                                                          >  1:1195822/1‑107                                                                                                                                       TGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTC                                                                          <  2:1195822/107‑1                                                                                                                                         AAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGAT                                                                                                           >  3:812841/1‑72                                                                                                                                         AAGGGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGAT                                                                                                           <  4:812841/72‑1                                                                                                                                            GGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAA                                                                                <  2:895020/96‑1                                                                                                                                            GGGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAA                                                                                >  1:895020/1‑96                                                                                                                                             GGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCA                                                                                                               >  2:871149/1‑64                                                                                                                                             GGCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCA                                                                                                               <  1:871149/64‑1                                                                                                                                              GCGTTCTAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGG                                                <  1:936700/126‑1                                                                                                                                              GCGTTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGG                                                >  2:936700/1‑126                                                                                                                                                 TTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGC                     >  2:1129180/1‑150                                                                                                                                                 TTCCAGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGC                     >  2:1129343/1‑150                                                                                                                                                       CCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGA               <  2:1191618/150‑1                                                                                                                                                        CCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAA              >  1:935847/1‑150                                                                                                                                                        CCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAA              <  1:829041/150‑1                                                                                                                                                        CCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGA                                 >  2:24261/1‑131                                                                                                                                                        CCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGA                                 <  1:24261/131‑1                                                                                                                                                         CCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAAT                         >  1:1253956/1‑138                                                                                                                                                         CCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAAT                         <  2:1253956/138‑1                                                                                                                                                         CCTTCAACCTGAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAAT             <  1:1102937/150‑1                                                                                                                                                           TTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAA           <  3:41602/150‑1                                                                                                                                                             CAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGACGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACA         >  2:371989/1‑150                                                                                                                                                              AACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAA        >  3:444392/1‑150                                                                                                                                                               ACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAAT       <  4:413132/150‑1                                                                                                                                                                 CTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATCA     >  2:545482/1‑150                                                                                                                                                                   TAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATCAGA   >  1:1226457/1‑150                                                                                                                                                                    AGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGGTGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATCAGAA  <  4:831147/150‑1                                                                                                                                                                                                                                                                                                                           TAATTAGCAGTCTGGTTGGCGATGCCCATCTCGGTGATCCGTGTCCTGCACGACGCCTTGCGTCACTAGCCTCTTCTCTAGCTCATCATGCAGGTCTTTCTAATTGTGAAATCATCCCACGCTACTGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/59445‑59280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccccttcaaccttagcAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATCAGAA  >  NC_000913_3_pae_tpiA/59320‑59466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.