mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 25.8% | 86.6 / 30.6 | 63 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 155 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1207790 = | 39 (0.890) | 6 (0.150) | 6/250 | 4.6 | 15.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1209619 = | 33 (0.850) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | 3423318 = | 51 (1.160) | 6 (0.150) | 6/264 | 4.9 | 11.5% | intergenic (+124/+105) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | 3423341 = | 45 (1.090) | intergenic (+147/+82) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 3908495 = | 43 (0.980) | 6 (0.140) | 6/272 | 5.0 | 13.7% | intergenic (‑129/+54) | pstB/pstA | phosphate ABC transporter ATPase/phosphate ABC transporter permease |
| ? | NC_000913_3_pae_tpiA | 3908518 = | 34 (0.800) | intergenic (‑152/+31) | pstB/pstA | phosphate ABC transporter ATPase/phosphate ABC transporter permease | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1351239 | 44 (1.000) | 6 (0.140) | 6/272 | 5.0 | 13.6% | intergenic (‑200/+168) | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| ? | NC_000913_3_pae_tpiA | 3908518 = | 34 (0.800) | intergenic (‑152/+31) | pstB/pstA | phosphate ABC transporter ATPase/phosphate ABC transporter permease | |||||
| * | ? | NC_000913_3_pae_tpiA | 2347190 = | NA (NA) | 5 (0.120) | 5/268 | 5.4 | NA | noncoding (31/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 4460414 | NA (NA) | noncoding (84/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 2347190 = | NA (NA) | 5 (0.120) | 5/268 | 5.4 | NA | noncoding (31/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 3234723 | NA (NA) | noncoding (86/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 2347190 = | NA (NA) | 5 (0.120) | 5/268 | 5.4 | NA | noncoding (31/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 2835148 | NA (NA) | noncoding (82/82 nt) | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | = 805981 | NA (NA) | 5 (0.120) | 5/268 | 5.4 | NA | noncoding (178/178 nt) | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913_3_pae_tpiA | 2347190 = | NA (NA) | noncoding (31/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | = 551510 | NA (NA) | 6 (0.140) | 5/268 | 5.4 | NA | noncoding (157/157 nt) | REP52 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP52 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913_3_pae_tpiA | 2347190 = | NA (NA) | noncoding (31/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 4284971 = | 45 (1.020) | 5 (0.120) | 5/278 | 5.6 | 10.1% | coding (159/315 nt) | yjcH | DUF485 family inner membrane protein |
| ? | NC_000913_3_pae_tpiA | 4284993 = | 45 (1.040) | coding (137/315 nt) | yjcH | DUF485 family inner membrane protein | |||||