New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1263650 =	69 (1.190)	24 (0.420)	23/272	2.4	26.9%	intergenic (‑150/‑64)	lolB/hemA	lipoprotein localization factor/glutamyl tRNA reductase
	?	NC_000913_3_pae_tpiA	= 1263818	63 (1.110)					coding (105/1257 nt)	hemA	glutamyl tRNA reductase

TACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/1263776‑1263650 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTT  <  NC_000913_3_pae_tpiA/1263818‑1263671                                                                                                                                                                                                                                                                                     TACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGA                                                                                                                               <  1:69222/150‑1        TCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATC                                                                                                                        <  3:190194/150‑1           CGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGG                                                                                                                     <  3:104865/150‑1            GCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGC                                                                                                                    <  3:197737/150‑1              AGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGA                                                                                                                  <  1:291916/150‑1                 GATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAA                                                                                                               <  3:191093/150‑1                  ATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGC                                                                                                                                       >  2:308853/1‑125                  ATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGC                                                                                                                                       <  1:308853/125‑1                      AGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATA                                                                                                          <  1:557375/150‑1                               TTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTC                                                                                                 <  1:432945/150‑1                                                    TAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAA                                                                                                                                                       <  1:365663/75‑1                                                    TAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAA                                                                                                                                                       >  2:365663/1‑75                                                                   gGCGGGCAATACTACCACCGTTGCTAGGGTTCGTGCGCTTCCATCATACAGGTTGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGNTACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGA                                                             <  1:292206/149‑1                                                                     CGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGT                                                           >  2:305914/1‑150                                                                        GAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGCTCGAGCTTATGCGACGAACACGATACACGTGCTCGCAGCGATACAGGTGCCGTGTTATGGTAGATACCGGGTGCT                                                        >  2:579949/1‑150                                                                        GAAATAATACCAACGTTGACAGGGTTAGGCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCT                                                        <  2:600461/150‑1                                                                                   AACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCAT                                             >  1:99908/1‑150                                                                                   AACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCAT                                             >  1:23391/1‑150                                                                                               GTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCAGGCGAAAACGATAGACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATAACGAGTGCTAAAAGGGTCATGTCTGCGGGAAA                                 >  3:11723/1‑150                                                                                                      TGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACC                          >  2:110152/1‑150                                                                                                                 TACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAG               >  1:389766/1‑150                                                                                                                  ACAGGATGCGTAAGCAGGCTGTCAAGAGCCTGATCGAGCTTATCCGACGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGG              >  2:297168/1‑150                                                                                                                      GATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAA                              <  2:418835/130‑1                                                                                                                      GATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAA                              >  1:418835/1‑130                                                                                                                         GCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTC       >  3:22878/1‑150                                                                                                                           GTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTG     >  2:604823/1‑150                                                                                                                              AGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTT  >  1:217314/1‑150                                                                                                                                                                                                                                                                                     TACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/1263776‑1263650 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTT  <  NC_000913_3_pae_tpiA/1263818‑1263671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.