| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_pae_tpiA | 1,362,060 | Δ228,509 bp | [puuR]–yneL | 223 genes [puuR], puuC, puuB, puuE, pspF, pspA, pspB, pspC, pspD, pspE, ycjM, ycjN, ycjO, ycjP, ycjQ, ycjR, ycjS, ycjT, ycjU, ycjV, ycjV, ompG, ycjW, ycjX, ycjF, tyrR, tpx, ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH1, ynaJ, uspE, fnr, ogt, abgT, abgB, abgA, abgR, mcaS, smrA, ydaM, ydaN, fnrS, dbpA, ttcA, intR, ydaQ, ydaC, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, tmpR, lomR, insH1, lomR, stfR, tfaR, pinR, ynaE, ttcC, uspF, ompN, micC, pfo, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD1, insC1, ydbA, insI1, ydbA, ydbC, ydbD, ynbA, ynbB, ynbC, ynbD, azoR, hrpA, ydcF, aldA, gapC, gapC, cybB, rydC, ydcA, hokB, mokB, sokB, trg, ydcI, ydcJ, opgD, ydcH, rimL, ydcK, tehA, tehB, ydcL, insP, insQ, ydcO, ydcN, ydcP, yncJ, hicA, hicB, ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ydcX, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncI, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddK, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA, sra, bdm, osmC, ddpF, ddpD, ddpC, ddpB, ddpA, ddpX, dosP, dosC, yddW, gadC, gadB, pqqL, yddB, yddA, ydeM, ydeN, ydeO, safA, ydeP, ydeQ, ydeR, ydeS, ydeT, yneL, yneL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_pae_tpiA | 1362060 | 1590568 | 228509 | 61 [0] | [0] 61 | [puuR]–yneL | [puuR],puuC,puuB,puuE,pspF,pspA,pspB,pspC,pspD,pspE,ycjM,ycjN,ycjO,ycjP,ycjQ,ycjR,ycjS,ycjT,ycjU,ycjV,ycjV,ompG,ycjW,ycjX,ycjF,tyrR,tpx,ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH1,ynaJ,uspE,fnr,ogt,abgT,abgB,abgA,abgR,mcaS,smrA,ydaM,ydaN,fnrS,dbpA,ttcA,intR,ydaQ,ydaC,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,tmpR,lomR,insH1,lomR,stfR,tfaR,pinR,ynaE,ttcC,uspF,ompN,micC,pfo,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD1,insC1,ydbA,insI1,ydbA,ydbC,ydbD,ynbA,ynbB,ynbC,ynbD,azoR,hrpA,ydcF,aldA,gapC,gapC,cybB,rydC,ydcA,hokB,mokB,sokB,trg,ydcI,ydcJ,opgD,ydcH,rimL,ydcK,tehA,tehB,ydcL,insP,insQ,ydcO,ydcN,ydcP,yncJ,hicA,hicB,ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ydcX,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncI,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddK,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA,sra,bdm,osmC,ddpF,ddpD,ddpC,ddpB,ddpA,ddpX,dosP,dosC,yddW,gadC,gadB,pqqL,yddB,yddA,ydeM,ydeN,ydeO,safA,ydeP,ydeQ,ydeR,ydeS,ydeT,yneL,yneL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1362059 | 0 (0.000) | 61 (0.950) | 47/276 | 0.3 | 100% | coding (149/558 nt) | puuR | repressor for the divergent puu operons, putrescine inducible |
| ? | NC_000913_3_pae_tpiA | 1590569 = | 0 (0.000) | intergenic (‑33/+285) | yneL/hipA | pseudogene, AraC family/inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase | |||||
GTGATGAGGGACTGGCGCCAGGAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1361915‑1362059‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCTGAACGAATAAC > NC_000913_3_pae_tpiA/1590569‑1590713 GTGATGAGGGACTGGCGCCAGGAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACC < 2:1059585/149‑1 GAGGGACTGGCGCCAGGAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTG < 2:282872/149‑1 GAGGGACTGGCGCCAGGAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACGCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTG < 2:357004/149‑1 GGGACTGGCGCCAGGAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGT < 2:298426/149‑1 GGCGCCAGGAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TC < 1:70401/149‑1 GCCAGGAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTA > 1:927243/1‑149 GCCAGGAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTATCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATAAGCACCCTCTGGTGTTT‑‑TCGTA > 1:674208/1‑149 AGGAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGC > 2:952995/1‑149 AACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGGTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGT > 1:74942/1‑149 AACGCTTGGCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGa < 2:1021616/149‑2 CTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTAT < 1:620536/149‑1 AGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCT < 1:191280/149‑1 GCAGGGGCTTTCACAACGTCGGGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCCGATATGTCATCGTGTG‑‑GTTGCTATGCGACAGACACTGCGCTCTTA < 1:544086/149‑1 GGGCTTTCACAACGTCGTGCCGCCGAACTCGCCGGGCTGACTCACCGTGCTATCAGTACGATAGAACAAGATAACGTCAGCCCTCCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCAT < 1:975973/149‑1 GCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGT > 1:352820/1‑101 GCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGT < 2:352820/101‑1 TTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGG < 1:961662/149‑1 CACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGGCACTGCGCTCTTAGCATGGGGCAG > 1:202122/1‑149 ACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGG < 2:881839/149‑1 ACGTCGTGCCGCCGAACTCGCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAA < 1:516847/149‑1 TGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCA > 2:808036/1‑149 CCGCCGAATTCGCCGGGCTGACTCACAGTGCTATCCGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGG < 1:331002/149‑1 TCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTC > 1:887646/1‑149 TCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTC > 1:154501/1‑149 TCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTC > 1:953924/1‑149 CTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGATTCACGAGGCTATTTCTCC > 2:315212/1‑149 ggaTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCA < 1:922916/146‑1 GCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGCATAACCAGGCTATTTCTCCATcccc > 1:315748/1‑145 TCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCA > 1:85157/1‑149 TCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCA > 1:447686/1‑149 ACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAAT > 2:191220/1‑149 AGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTA > 1:616894/1‑149 TGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATG < 1:910396/149‑1 ccATCAGTACGATAGAACAAGACAACGTCCGCCCTGACATCAGCACCATCTGGGGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACTCTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAA < 1:95385/147‑1 TATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTCTGAAA > 2:396039/1‑149 TATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAA < 1:408387/149‑1 ATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAAG > 2:27018/1‑149 ATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCAT > 1:1036353/1‑98 ATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCAT < 2:1036353/98‑1 ATAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAAGAGGAGAGGC < 2:447686/149‑1 TAGAACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAAGAGGAGAGGCT > 2:918392/1‑149 aaAACCAGGTAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTT‑ACAATCGGTGAGGCCAATTATGAAAGAGGAGAGGCTT < 2:793927/147‑1 tCAAGATAAAGTCAGCCCGGCCGCCAGCACCCTCTTGTGTTT‑‑TCGTAGGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAAGAGGAGAGGCTTAAG < 2:154501/148‑1 ACAAGATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAAGAGGAGAGGCTTAAG > 1:407196/1‑149 CAAGATAAAGTCAGCCCTGCCATCAGCCCCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAAGTGGAGAGGCTTAAGT > 2:1088886/1‑149 ATAAAGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATACAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTT > 2:859939/1‑149 AGTCAGCCCTTCCAGCAGCACCCTTTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCATGCTATTGCTCCAT‑GCATAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAAC < 2:453910/149‑1 AGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGA > 1:91975/1‑123 AGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGA < 2:91975/123‑1 AGTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGAGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAAC < 1:764986/149‑1 GTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAGAGGGGAGAGGCTTAAGTTCTTGAACC > 2:367592/1‑149 GTCAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACC > 2:986487/1‑149 TCAGCCCTGCCATCAGCCCCCTCTGGTGGTT‑‑TCGTATGCAGTGTCTATGCGACTGACACTGCGCTCTTAGCATGGGGCTGGGAATAACCAGGCTATTTCTCCGT‑ACACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCC > 2:620111/1‑149 CAGCCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTATTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCT < 2:887646/149‑1 CCCTGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCCCAGGCCAACTCTGAAAGAGGAGCGCCTTAAGTCCTTGAAACCTGAA > 2:624920/1‑149 TGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAA < 2:77449/116‑1 TGCCATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAA > 1:77449/1‑116 ATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCTGAACGAATAA > 1:1082927/1‑149 ATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCAAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCTGAACGAATAA > 1:583671/1‑149 ATCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATATCTCCAT‑GCACAGGCCAATTATGAAGGAGGAGAGGCTTAAGTTCTTGAACCCTGGACGAATAA > 1:980507/1‑149 TCAGCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCTGAACGAATAAC > 1:744544/1‑149 GTGATGAGGGACTGGCGCCAGGAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1361915‑1362059‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagCACCCTCTGGTGTTT‑‑TCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAT‑GCACAGGCCAATTATGAAAGAGGAGAGGCTTAAGTTCTTGAACCCTGAACGAATAAC > NC_000913_3_pae_tpiA/1590569‑1590713 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |