| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 4385264 = | 58 (0.880) | 4 (0.070) | 4/260 | 8.9 | 6.5% | intergenic (+7/‑45) | yjeM/yjeN | putative transporter/uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 4385291 = | 61 (1.010) | intergenic (+34/‑18) | yjeM/yjeN | putative transporter/uncharacterized protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/4385418‑4385264‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgatagggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGCCTGCCACACCCGTAAA > NC_000913_3_pae_tpiA/4385291‑4385437 TCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAACTTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGg > 1:215636/1‑148TCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAAAAAATCCCGGCTCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCCGGTAGCCGA > 1:215232/1‑149 GACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTAATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCGCTATCGTACGGTAGACGATA > 1:25099/1‑149 ACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAG > 2:151563/1‑149 ACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCAATAACATTTCCTGTCTTTACGCCCTATCGTCGGGTAGACGATAG > 1:82603/1‑149 AAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGGCATCCATAACAGTGCCTGTCTTTACGGCCTCTCGTCAGGACGACCATAGGG > 2:70314/1‑149 AAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGG < 1:603441/147‑1 AAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGG > 2:603441/1‑147 GTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA > 1:368717/1‑115 GTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA < 2:368717/115‑1 TCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAA > 1:297786/1‑149 CTATCGTCAGGTAGACGCTAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATCACCGAAGCTGAAATCACGGCGCTGCAATTTTCTGCCGGGGATGTGCCGCAGCTCGACCAGACGATTCTCTCTTTTGT > 2:478924/1‑149 ctaATAGGGCGTAAACAGCGGAAATGTTATGTATGACACCAGCAGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGCCTGCCACA < 1:428284/146‑1 GCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCACTTTTGTCGATGCCTGCCACACCCGTAAA > 2:443156/1‑149 GCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTATCTCTTTTGTCGATGCCTGCCACACCCGTAAA < 1:545808/149‑1 TCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/4385418‑4385264‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgatagggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGCCTGCCACACCCGTAAA > NC_000913_3_pae_tpiA/4385291‑4385437 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |