New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 4549702	NA (NA)	4 (0.060)	4/268	9.1	NA	noncoding (4/36 nt)	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_pae_tpiA	= 4549734	NA (NA)					noncoding (36/36 nt)	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGC  >  NC_000913_3_pae_tpiA/4549587‑4549882                                                                                                                                                    |                                                                                                                                                     tgtgCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCa                                                                                                                                                     <  1:121131/149‑1 (MQ=255)   tgCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATa                                                                                                                                                   >  1:697358/1‑149 (MQ=255)     cAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTGAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATaaa                                                                                                                                                 >  1:980876/1‑149 (MQ=255)      aaTCGATTATTGGCGTGACTTTTGTTTATCAATAAACGTTGCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATaacc                                                                                                                                                >  1:820438/1‑147 (MQ=39)        tCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACaa                                                                                                                                              >  1:775106/1‑149 (MQ=255)        tCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACaa                                                                                                                                              >  1:775147/1‑149 (MQ=255)          gATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCAAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAg                                                                                                                                            >  1:563550/1‑149 (MQ=255)              tttGGCGTGACTTTTGTTTCTCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAgcgcc                                                                                                                                        >  1:918047/2‑148 (MQ=255)               ttGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCAc                                                                                                                                       <  1:473070/149‑1 (MQ=255)                  gCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACttt                                                                                                                                    <  1:851975/149‑1 (MQ=255)                    gTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGc                                                                                                                                  >  1:618626/1‑149 (MQ=255)                     tGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATCACACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCt                                                                                                                                 >  2:1090371/1‑149 (MQ=255)                     tGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCt                                                                                                                                 >  1:894419/1‑149 (MQ=255)                         ttttGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCACTATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCGGGCATAAACAAAGCGCACTTTGCTGGTc                                                                                                                             >  1:939631/1‑149 (MQ=255)                         ttttGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTc                                                                                                                             >  1:169400/1‑149 (MQ=255)                         ttttGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTc                                                                                                                             >  2:73382/1‑149 (MQ=255)                          tttGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCt                                                                                                                            <  1:765865/149‑1 (MQ=255)                             gTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGtt                                                                                                                         >  1:723966/1‑149 (MQ=255)                              tttATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTc                                                                                                                        >  2:168169/1‑149 (MQ=255)                                tATCCACAAAGAAATCACAGGATAATGCCAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTccc                                                                                                                      <  1:1078880/149‑1 (MQ=39)                                   cAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAGTAACTGAAGCTCAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTAGCATCTGGAATAAACAAAGAGCACTTTGCTGGCCTGTTCCACTc                                                                                                                   >  2:870926/1‑149 (MQ=37)                                    aaTAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCa                                                                                                                  >  1:1065764/1‑149 (MQ=255)                                     aTAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCAc                                                                                                                 <  2:169400/149‑1 (MQ=255)                                      tAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCGGTTCCCCTCAcc                                                                                                                >  1:410465/1‑149 (MQ=255)                                        aaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACCAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCt                                                                                                              >  1:77559/1‑149 (MQ=255)                                        aaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCCCTTTGCTGGTCTGTTCCCCTCACCCt                                                                                                              >  2:1068897/1‑149 (MQ=255)                                        aaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCt                                                                                                              >  1:103523/1‑149 (MQ=255)                                         aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTa                                                                                                             >  1:392077/1‑149 (MQ=255)                                          gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGCCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTaa                                                                                                            >  2:433241/1‑149 (MQ=255)                                                 caGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCtctc                                                                                                     >  2:150334/1‑149 (MQ=255)                                                    gACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTcccc                                                                                                  >  1:945927/1‑149 (MQ=255)                                                      cATTGCTAATGCTGGTACGCAATATTACCTGCAGCTCAAAACCTGCACGTCAGCCCTTTGTCGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCgg                                                                                                <  1:700369/149‑1 (MQ=255)                                                       aTTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGa                                                                                               <  1:168169/149‑1 (MQ=255)                                                        ttGCTAATGCTGGTACGCAATATTACCTGAAGCTCCGAAGGTGGACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAg                                                                                              >  1:821012/1‑149 (MQ=39)                                                        ttGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGGCCGCGTCGCATCTGGCATACACAAAGCGCACTTTGCTGGTCTGTTCCCCTCCCCCTAACCCTCTCCCCGGAg                                                                                              <  2:106291/149‑1 (MQ=255)                                                        tcgCTGATGCGGGGACGCATTATGACCTGAAGCTAAAAACCGGAACGGTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCTTCTCATCTGGCAGAAACAAAGCGCACTGGGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAg                                                                                              <  2:786439/147‑1 (MQ=255)                                                         tGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAgg                                                                                             >  1:610950/1‑149 (MQ=255)                                                         tGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAgg                                                                                             <  1:150334/149‑1 (MQ=255)                                                          gCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTAACCCTAACCCTCTCCCCGGAggg                                                                                            >  1:794380/1‑149 (MQ=255)                                                              aTGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGa                                                                                        <  2:395240/149‑1 (MQ=255)                                                               tGCTGGTACGCAATATTACCTGAAGCTAAACACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAg                                                                                       <  1:421610/149‑1 (MQ=255)                                                                gcgggTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAgg                                                                                      <  2:469558/146‑1 (MQ=255)                                                                gCTGGTACGCAATATTACGTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGAGGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAgg                                                                                      <  2:887617/149‑1 (MQ=255)                                                                gCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAgg                                                                                      <  1:962831/149‑1 (MQ=255)                                                                 cTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAggg                                                                                     <  2:812714/149‑1 (MQ=255)                                                                    gTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGAc                                                                                  >  1:500425/1‑149 (MQ=255)                                                                        gCAACATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTc                                                                              >  2:691118/1‑149 (MQ=255)                                                                         cAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGGGCACTTACCCCGGATTTGCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGGGGGGACTGTcc                                                                             >  1:210247/1‑149 (MQ=25)                                                                         cAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGCGGGGCGCGGGGACTGTcc                                                                             >  2:577530/1‑149 (MQ=255)                                                                         cAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTcc                                                                             >  1:704963/1‑149 (MQ=255)                                                                          aaTATTACCTGAAGCTAAAGACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCATCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTccc                                                                            <  1:1049055/149‑2 (MQ=255)                                                                          aaTATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAAcc                                                                                                          <  1:526803/119‑1 (MQ=255)                                                                          aaTATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAAcc                                                                                                          >  2:526803/1‑119 (MQ=255)                                                                           atatTACCTGGAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCgg                                                                           <  2:943118/149‑1 (MQ=255)                                                                              ttACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGACTCTGGCATCTACATAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCATCTCCCCGGAGGGGCGAGGGGACTGTCCGGGca                                                                        >  2:306/1‑149 (MQ=38)                                                                                 ccTGAAACTAAAAACCTGCACGTTAGCCCTTTGCAGGCCAGATAAGACGCGTCAGCAACGCATCTGACATAAACAAAGCACACTTTGCTGGTCTGTTCCCCTCACACTAACCCTCTCACCGGAGGGCACGGGGGACTACGCGGGCACAt                                                                     >  2:648183/1‑149 (MQ=25)                                                                                  cTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCtctc                                                                                                     <  1:1013036/116‑1 (MQ=255)                                                                                  cTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCtctc                                                                                                     >  2:1013036/1‑116 (MQ=255)                                                                                  cTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGCGGGGCCTGTCCGGGCCCAtt                                                                    >  2:935898/1‑149 (MQ=255)                                                                                  cTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACAtt                                                                    >  1:6148/1‑149 (MQ=255)                                                                                    gacgCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGAGAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACAtttt                                                                  <  1:199781/146‑1 (MQ=255)                                                                                         tAAAAACCTGCACGTTAGCCCTTTGTAGGCCGGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGAc                                                             >  1:611060/1‑149 (MQ=255)                                                                                         tAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGAc                                                             >  1:407260/1‑149 (MQ=255)                                                                                         tAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGAc                                                             <  1:91258/149‑1 (MQ=255)                                                                                            aaaCCTGGAGGTTAGCGCTTTGTAGGCCAGATAAGACGCGTCAGTGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCGCCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACttt                                                          <  2:988460/149‑1 (MQ=39)                                                                                            aaaCCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTGAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACttt                                                          <  2:731906/149‑1 (MQ=255)                                                                                            aaaCCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTACGTCTGACCTCCGATGGGCGAGGGGACTGTCCGGGCACATTTTTAGACttt                                                          >  1:363718/1‑149 (MQ=37)                                                                                            aaaCCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACttt                                                          <  2:1099113/149‑1 (MQ=255)                                                                                            aaaCCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACttt                                                          >  1:251363/1‑149 (MQ=255)                                                                                            aaaCCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACttt                                                          >  1:69606/1‑149 (MQ=255)                                                                                            aaaCCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACttt                                                          <  2:610950/149‑1 (MQ=255)                                                                                                cTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtca                                                      >  1:486148/1‑149 (MQ=255)                                                                                                 tGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtcat                                                     >  1:274768/1‑149 (MQ=255)                                                                                                     cGTTAGCCCTTTGTAGGCCAGAGAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGt                                                 <  2:939631/149‑1 (MQ=255)                                                                                                      gTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTGGAATCTGGCATAAACAAAGCGCAATTTGCTGGTCTGTTCACCTCACCCTACCCCTCTCCCCGGGGGGGCGAGGGGACTGTCCGGGCACATTTTTGAACTTTGTCGTCGGTc                                                >  2:925678/1‑149 (MQ=38)                                                                                                       ttAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCAcc                                                                                                                <  1:198839/84‑1 (MQ=255)                                                                                                       ttAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCAcc                                                                                                                >  2:198839/1‑84 (MQ=255)                                                                                                           cccTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGc                                           >  1:833411/1‑149 (MQ=255)                                                                                                             cTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCt                                         <  1:18314/149‑1 (MQ=255)                                                                                                             cTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCt                                         >  1:858380/1‑149 (MQ=255)                                                                                                                    ggCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTTCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTg                                  >  2:934426/1‑149 (MQ=255)                                                                                                                    ggCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTg                                  <  1:254785/149‑1 (MQ=255)                                                                                                                      ccAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGGCTGCCATTGGc                                >  1:665700/1‑149 (MQ=255)                                                                                                                       cAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCa                               <  2:392077/149‑1 (MQ=255)                                                                                                                       cAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCa                               <  1:614001/149‑1 (MQ=255)                                                                                                                        aGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAg                              <  2:918047/149‑1 (MQ=255)                                                                                                                         gATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGATCCTGCCATTGGCAgg                             >  1:221405/1‑149 (MQ=255)                                                                                                                              ggcgcgTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGATGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTg                        <  1:270203/147‑1 (MQ=255)                                                                                                                              gACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCCCCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCCGTCTGAGCCTGCCATTGGCAGGCTCTg                        >  1:473406/1‑149 (MQ=255)                                                                                                                              gACGCGGTAGCGTCGCATCGGCCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAGCCCTCACCCCGGCGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTg                        <  1:923707/149‑1 (MQ=38)                                                                                                                                cgcgTCAGCGTCGCATCTGGCATAAACAAAGCGCAATTTGCGTGTCTGTTCCCCGCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGgt                      <  2:945927/149‑1 (MQ=255)                                                                                                                                   gTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAGCCCACTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTc                   <  2:894419/149‑1 (MQ=255)                                                                                                                                   gTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTc                   <  2:704963/149‑1 (MQ=255)                                                                                                                                   gTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTc                   <  2:486148/149‑1 (MQ=255)                                                                                                                                    tCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCCGCGGCACTGTCCGGGCACATTATTAGACTTTTTCATCGGTCTGCGCCTGCCACTGCCACGCCCTgggctcc                  >  2:529067/1‑144 (MQ=255)                                                                                                                                       gCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTg                                                         >  1:464851/1‑107 (MQ=255)                                                                                                                                       gCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTg                                                         <  2:464851/107‑1 (MQ=255)                                                                                                                                            gCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACACTCTACGGCGATGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCTGTCTTAGCCTTCCATTATCATGCTCTGTTTCCCTTTTACGc          >  1:374232/1‑149 (MQ=255)                                                                                                                                               tCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGTAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGAGTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTAc       >  2:835141/1‑149 (MQ=255)                                                                                                                                                    cATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGc  <  1:691118/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCATGC  >  NC_000913_3_pae_tpiA/4549587‑4549882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.