New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1263650 =	116 (1.110)	59 (0.580)	44/276	2.9	34.0%	intergenic (‑150/‑64)	lolB/hemA	lipoprotein localization factor/glutamyl tRNA reductase
	?	NC_000913_3_pae_tpiA	= 1263818	116 (1.140)					coding (105/1257 nt)	hemA	glutamyl tRNA reductase

GATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/1263801‑1263650 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTT  <  NC_000913_3_pae_tpiA/1263818‑1263671                                                                                                                                                                                                                                                                                                              GATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTA                                                                                                                                                        <  2:932834/150‑1  ATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAA                                                                                                                                                       >  3:515900/1‑150       GCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGG                                                                                                                                                  <  1:1007239/150‑1       GCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGG                                                                                                                                                  <  3:503070/150‑1          TATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTG                                                                                                                                               <  1:1010267/150‑1           ATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTTCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGT                                                                                                                                              <  3:507059/150‑1            TCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTC                                                                                                                                             <  2:362637/150‑1            TCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTC                                                                                                                                             <  4:141103/150‑1                  GAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGC                                                                                                                                       <  2:801592/150‑1                      ACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAATGCTAACAGGGTCATGTCGGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGA                                                                                                                                   <  3:488695/150‑1                       CGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGAT                                                                                                                                  <  4:395247/150‑1                          TACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGA                                                                                                                               <  1:218696/150‑1                           ACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAG                                                                                                                              <  1:668993/150‑1                            CACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGC                                                                                                                             <  1:543350/150‑1                            CACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGC                                                                                                                             <  1:1118067/150‑1                               GTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTA                                                                                                                          <  2:358606/150‑1                                  CTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCC                                                                                                                       <  2:729149/150‑1                                  CTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGCGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCC                                                                                                                       <  1:535184/150‑1                                     GCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGC                                                                                                                    <  3:642569/150‑1                                     GCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAATCGGATTGCCTCACGCATGAACCGTAAGCAGACTGGCGAGCGCCGGATCGAGCTTATCCGGC                                                                                                                    >  3:97956/1‑150                                                     CGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTT                                                                                                    >  1:74305/1‑150                                                      GTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGA                                                                                                                               <  2:456159/122‑1                                                      GTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGA                                                                                                                               >  1:456159/1‑122                                                            TGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAG                                                                                             >  1:126274/1‑150                                                              GTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCTCGCTGTAAAACGCCTCCCCCAGCTGATCCGACGGAAACAATACACGATCTCGCAGCG                                                                                           >  4:601452/1‑150                                                                 GATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGT                                                                                                                                              >  3:242110/1‑96                                                                 GATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGT                                                                                                                                              <  4:242110/96‑1                                                                     CCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGG                                                                                    <  2:126274/150‑1                                                                     CCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGC                                                                                                                             >  1:416312/1‑109                                                                     CCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGC                                                                                                                             <  2:416312/109‑1                                                                              AAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAG                                                                                                                                                      <  3:500449/75‑1                                                                              AAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAG                                                                                                                                                      >  4:500449/1‑75                                                                                    GTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGAGCGAGCGTATCCGGCGAAAACGATACACGTACTCGCAGCGATACAGGTGCCGTTTTATGGTT                                                                     <  3:70131/150‑1                                                                                       ATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGA                                                                                          <  3:601532/126‑1                                                                                       ATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGA                                                                                          >  4:601532/1‑126                                                                                       ATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGC                                                                                                                                                     >  3:298728/1‑67                                                                                        TGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAG                                                                                                                                                   >  3:468789/1‑68                                                                                           CTGCGGGAAATAATACCACCGGTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCG                                                              <  1:412515/150‑1                                                                                                    ATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAA                                                     >  4:633559/1‑150                                                                                                    ATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAA                                                     >  3:101888/1‑150                                                                                                       ATACCAATGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGG                                                  <  3:633559/150‑1                                                                                                       ATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGTATAGGCTGGTTGACAAGCGCCGGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGGTACCGAGTGCTAATAGG                                                  >  3:688578/1‑150                                                                                                       ATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCAAAACCTGGGGGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGG                                                  >  3:688579/1‑150                                                                                                        TACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGG                                                 >  3:297764/1‑150                                                                                                         ACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCTGGCGAAAACGATACACGTTCTCGCGGCGTTACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGT                                                <  2:74305/150‑1                                                                                                          CCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAG                                                                                                                              <  1:741047/71‑1                                                                                                          CCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAG                                                                                                                              >  2:741047/1‑71                                                                                                                       GGTTAGTCTGCTTGCATCATACAGGCTGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAA                                  <  3:664901/150‑1                                                                                                                       GGTTAGTCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAA                                  >  4:614469/1‑150                                                                                                                             TCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATA                            >  1:343689/1‑150                                                                                                                             TCTGCTTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATA                            >  1:343775/1‑150                                                                                                                                  TTGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAAC                       >  1:959040/1‑150                                                                                                                                   TGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACG                      >  2:676147/1‑150                                                                                                                                   TGCATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACG                      >  3:258507/1‑150                                                                                                                                     CATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGT                                                           >  3:474291/1‑111                                                                                                                                     CATCATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGT                                                           <  4:474291/111‑1                                                                                                                                        CATACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGAT                 >  1:995363/1‑150                                                                                                                                           ACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGG              >  2:237238/1‑150                                                                                                                                           ACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGG              >  1:858599/1‑150                                                                                                                                           ACAGGATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGG              >  1:517422/1‑150                                                                                                                                               GATGCGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTA          >  2:991734/1‑150                                                                                                                                                   CGTAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCT      >  1:1092760/1‑150                                                                                                                                                     TAAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGC    <  1:409268/150‑1                                                                                                                                                      AAGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCT   >  4:503070/1‑150                                                                                                                                                       AGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTT  <  4:134879/150‑1                                                                                                                                                       AGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTT  <  1:899093/150‑1                                                                                                                                                       AGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTT  >  2:1010267/1‑150                                                                                                                                                       AGCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGCCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTT  >  2:334040/1‑150                                                                                                                                                        GCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATA                                                                                                          >  1:353081/1‑45                                                                                                                                                        GCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATA                                                                                                          <  2:353081/45‑1                                                                                                                                                                                                                                                                                                              GATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTTGCATCATACAGGATGCGTAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/1263801‑1263650 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagCAGGCTGTCAAGCGCCTGATCGAGCTTATCCGGCGAAAACGATACACGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTGATACCGAGTGCTAAAAGGGTCATGTCTGCGGGAAATAATACCAACGTTGATAGGGTTAGTCTGCTT  <  NC_000913_3_pae_tpiA/1263818‑1263671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.