| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1175520 | 76 (0.800) | 12 (0.130) | 10/266 | 11.1 | 14.1% | coding (94/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein |
| ? | NC_000913_3_pae_tpiA | = 1175547 | 73 (0.800) | coding (121/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCATCTTGCTTTCGCTTATATACTCGTGTCTTTGCTACAGCAACCAGACGGATTTCATGTACCAACCTGTCGCTCTATTTATTGGCCTGCGTTACATGCGTGGGCGTGCAGCGGATCGCTTCGGTCGTTTCGTCTCCTGGCTTTCTACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1175371‑1175520‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaGCGCCATCACCCCGAGGGTAATGCCGATGGTAGAAAGCCAGGAGACGAAACGACCGAAGCGATCCGCTGCACGCCCACGCATGTAACGCAGGCCAATAAATAGAGCGACAGGTTGGTACATGAAATCCGTCTGGTTGCTGTAGCAAA < NC_000913_3_pae_tpiA/1175547‑1175401 CCATCTTGCTTTCGCTTATATACTCGTGTCTTTGCTACAGCAACCAGACGGATTTCATGTACCAACCTGTCGCTCTATTTATTGGCCTGCGTTACATGCGTGGGCGTGCAGCGGATCGCTTCGGTCGTTTCGTCTCCTGGCTTTCTACCA > 4:619941/1‑150 ACCAGACGGATTTCATGTACCAACCTGTCGCTCTATTTATTGGCCTGCGTTACATGCGTGGGCGTGCAGCGGATCGCTTCGGTCGTTTCGTCTCCTGGCTTTCTACCAGCGCCATCACCCCGAGGGTAATGCCGATGGTAGAAAGCCAGG < 1:68296/150‑1 ATTTATTGGCCTGCGTTACATGCGTGGGCGTGCAGCGGATCGCTTCGGTCGTTTCGTCTCCTGGCTTTCTACCATCGGCATCACCCCGAGGGTAATGCCGAT > 1:228085/1‑102 ATTTATTGGCCTGCGTTACATGCGTGGGCGTGCAGCGGATCGCTTCGGTCGTTTCGTCTCCTGGCTTTCTACCATCGGCATCACCCCGAGGGTAATGCCGAT < 2:228085/102‑1 ATTTATTGGCCTGCGTTACATGCGTGGGCGTGCAGCGGATCGCTTCGGTCGTTTCGTCTCCTGGCTTTCTACCATCGGCATCACCCCGAGGGTAATGCCGAT < 2:227977/102‑1 ATTTATTGGCCTGCGTTACATGCGTGGGCGTGCAGCGGATCGCTTCGGTCGTTTCGTCTCCTGGCTTTCTACCATCGGCATCACCCCGAGGGTAATGCCGAT > 1:227977/1‑102 GCGTTACATGCGTGGGCGTGCAGCGGATCGCTTCGGTCGTTTCGTCTCCTGGCTTTCTACCAGCGCCATCACCCCGAGGGTAATGCCGATGGTAGAAAGCCAGGAGACGAAACGACCGAA > 3:234107/1‑120 GCGTTACATGCGTGGGCGTGCAGCGGATCGCTTCGGTCGTTTCGTCTCCTGGCTTTCTACCAGCGCCATCACCCCGAGGGTAATGCCGATGGTAGAAAGCCAGGAGACGAAACGACCGAA < 4:234107/120‑1 AGCGGATCGCTTCGGTCGTTTCGTCTCCTGGCTTTCTACCATCGGCATCACCCCGAGGGTAATGC < 1:73428/65‑1 AGCGGATCGCTTCGGTCGTTTCGTCTCCTGGCTTTCTACCATCGGCATCACCCCGAGGGTAATGC > 2:73428/1‑65 TCGCTTCGGTCGTTTCGTCTCCTGGCTTTCTACCAGCGCCATCACCCCGAGGGTAATGCCGA < 3:584526/62‑1 TCGCTTCGGTCGTTTCGTCTCCTGGCTTTCTACCAGCGCCATCACCCCGAGGGTAATGCCGA > 4:584526/1‑62 TTTCGTCTCCTGGCTTTCTACCATCGCCATCACCCCGAGGGTAATGCCGATGGTAGAAAGCCAGGAGACGAAACGACCGAAGCGATCCGCTGAACGCCCACGCATGTAAAGCAGGCCAATAAATAGAGCGACCGGTCGGTACATGAAATC > 4:224532/1‑150 tccgCAGCGCCATCACCCCGAGGGTAATGCCGATGGTAGAAAGCCAGGAGACGAAACGACCGAAGCGATCCGCTGCACGCCCACGCATGTAACGCAGGCCAATAAATAGAGCGACAGGTTGGTACATGAAATCCGTCTGGTTGCTGTAGC < 4:325478/146‑1 ACCAGCGCCATCACCCCGAGGGTAATGCCGATGGTAGAAAGCCAGGAGACGAAACGACCGAAGCGATCCGCTGCACGCCCACGCATGTAACGCAGGCCAATAAATAGAGCGACAGGTTGGTACATGAAATCCGTCTGGTTGCTGTAGCAA > 4:588107/1‑150 CCAGCGCCATCACCCCGAGGGTAATGCCGATGGTAGAAAGCCAGGAGACGAAACGACCGAAGCGATCCGCTGCACGCCCACGCATGTAACGCAGGCCAATAAATAGAGCGACAGGTTGGTACATGAAATCCGTCTGGTTGCTGTAGCAAA > 1:995973/1‑150 CAGCGCCATCACCCCGAGGGTAATGCCGATGGTAGAAAGCCAGGAGACGAAACGACCGAAGCGATCCGCTGCACGCCCACGCATGTAACGCAGGCCAATAAATAGAGCGACAGGTTG < 1:618936/117‑1 CAGCGCCATCACCCCGAGGGTAATGCCGATGGTAGAAAGCCAGGAGACGAAACGACCGAAGCGATCCGCTGCACGCCCACGCATGTAACGCAGGCCAATAAATAGAGCGACAGGTTG > 2:618936/1‑117 CCATCTTGCTTTCGCTTATATACTCGTGTCTTTGCTACAGCAACCAGACGGATTTCATGTACCAACCTGTCGCTCTATTTATTGGCCTGCGTTACATGCGTGGGCGTGCAGCGGATCGCTTCGGTCGTTTCGTCTCCTGGCTTTCTACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1175371‑1175520‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaGCGCCATCACCCCGAGGGTAATGCCGATGGTAGAAAGCCAGGAGACGAAACGACCGAAGCGATCCGCTGCACGCCCACGCATGTAACGCAGGCCAATAAATAGAGCGACAGGTTGGTACATGAAATCCGTCTGGTTGCTGTAGCAAA < NC_000913_3_pae_tpiA/1175547‑1175401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |