New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 90070695 (1.010)9 (0.100) 9/250 11.0 9.3% intergenic (‑131/+160) artJ/artM arginine ABC transporter periplasmic binding protein/arginine ABC transporter permease
?NC_000913_3_pae_tpiA = 900713 89 (1.030)intergenic (‑138/+153) artJ/artM arginine ABC transporter periplasmic binding protein/arginine ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAAGCGGCAAGAACTAACTTTTTCATGATGGAACTCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAAGACGGACAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/900550‑900706
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagacggacaacCCACTAAGTTGTCCGTCTTTTTTATTTCATTTAAATTATTTAATCATGTTTATTGCATATAAATTCACTTGATGGCATTGTTATCCCATGCCGCAGACACGGCCAAAAATCATAAGATTGACAGACGGGAGTTCCATCATGAAAAAGT  <  NC_000913_3_pae_tpiA/900713‑900566
                                                                                                                                                                                                                                                                                                                 
AAAGCGGCAAGAACTAACTTTTTCATGATGGAACTCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAAGAC                                                                                                                                                             <  1:250046/150‑1
    CGGCAAGAACTAACTTTTTCATGATGGAACTCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAAGACGGAC                                                                                                                                                         >  2:75426/1‑150
      GCAAGAACTAACTTTTTCATGATGGAACTCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAAGACGGACAA                                                                                                                                                       >  1:887328/1‑150
       CAAGAACTAACTTTTTCATGATGGAACTCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAAGACGGACAAC                                                                                                                                                      >  3:353792/1‑150
               AACTTTTTCATGATGGAACTCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAAGACGGACAACCCACTAAG                                                                                                                                              >  3:312451/1‑150
                                  TCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAA                                                                                                                                                                <  4:549214/113‑1
                                  TCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAA                                                                                                                                                                >  3:549214/1‑113
                                         TGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAAGACGGACAACCCACTAAGTTGTCCGTCTTTTTTATTTCATTTAA                                                                                                                    <  1:330345/150‑1
                                              ATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAAGACGGACAACCCACTAAGTTGTCCGTCTTTTTTATTTCATTTAAATTAT                                                                                                               <  1:404755/150‑1
                                                     GATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAAGACGGACAACCCACTAAGTTGTCCGTCTTTT                                                                                                                                 <  2:136796/125‑1
                                                     GATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAAGACGGACAACCCACTAAGTTGTCCGTCTTTT                                                                                                                                 >  1:136796/1‑125
                                                                                                                        ATTAAATAATTTAAATGAAATAAAAAAGACGGACAACCCACTAAGTTGTCC                                                                                                                                        <  4:419911/51‑1
                                                                                                                        ATTAAATAATTTAAATGAAATAAAAAAGACGGACAACCCACTAAGTTGTCC                                                                                                                                        >  3:419911/1‑51
                                                                                                                                        GAAATAAAAAAGACGGACAACCCACTAAGTTGTCCGTCTTTTTTATTTCATTTAAATTATTTAATCATGCTTATTGCATATAAATTCACTTGATGGCATTGTTATCCCATGCC                                                          <  2:221778/113‑1
                                                                                                                                        GAAATAAAAAAGACGGACAACCCACTAAGTTGTCCGTCTTTTTTATTTCATTTAAATTATTTAATCATGCTTATTGCATATAAATTCACTTGATGGCATTGTTATCCCATGCC                                                          >  1:221778/1‑113
                                                                                                                                                 AAGACGGACAACCCACTAAGTTGTCCGTCTTTTTTATTTCATTTAAATTATTTAATCATGTTTATTGCATATAAATTCACTTGATGGCATTGTTATCCCATGCCGCAGACACGGCCAAAAATCATAAGATTGACAGACGGGAGTTCCATC            <  4:323545/150‑1
                                                                                                                                                  AGACGGACAACCCACTAAGTTGTCCGTCTTTTTTATTTCATTTAAATTATTTAATCATGTTTATTGCATATAAATTCACTTGATGGCATTGTTATCCCATGCCGCAGACACGGCCAAAAATCATAAGATTGACAGACGGGAGTTCCATCA           <  1:781432/150‑1
                                                                                                                                                    ACGGACAACCCACTAAGTTGTCCGTCTTTTTTATTTCATTTAAATTATTTAATCATGTTTATTGCATATAAATTCACTTGATGGCATTGTTATCCCATGCCGCAGACACGGCCAAAAATCATAAGATTGACAGACGGGAGTTCCATCATG         <  3:197881/150‑1
                                                                                                                                                           ACCCACTAAGTTGTCCGTCTTTTTTATTTCATTTAAATTATTTAATCATGTTTATTGCATATAAATTCACTTGATGGCATTGTTATCCCATGCCGCAGAGACGGCCAAAAATCATAAGATTGACAGACGGGAGTTCCATCATGAAAAAGT  >  1:555454/1‑150
                                                                                                                                                           ACCCACTAAGTTGTCCGTCTTTTTTATTTCATTTAAATTATTTAATCATGTTTATTGCATATAAATTCACTTGATGGCATTGTTATCCCATGCCGCAGACACGGCCAAAAATCATAAGATTGACAGACGGGAGTTCCATCATGAAAAAGT  <  1:677856/150‑1
                                                                                                                                                                                                                                                                                                                 
AAAGCGGCAAGAACTAACTTTTTCATGATGGAACTCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAAGACGGACAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/900550‑900706
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagacggacaacCCACTAAGTTGTCCGTCTTTTTTATTTCATTTAAATTATTTAATCATGTTTATTGCATATAAATTCACTTGATGGCATTGTTATCCCATGCCGCAGACACGGCCAAAAATCATAAGATTGACAGACGGGAGTTCCATCATGAAAAAGT  <  NC_000913_3_pae_tpiA/900713‑900566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.