| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 3547920 | 100 (1.170) | 11 (0.140) | 9/244 | 9.4 | 10.9% | noncoding (34/87 nt) | REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 3547936 | NA (NA) | noncoding (50/87 nt) | REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTCAAAGAGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/3547758‑3547920‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttatccggcctacTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCACCATATTCAGCAGCAGACAGCCTACCAGACCGCACACCGAGATAATGGTTTCCAGCATCGACCAGGATTTGATGGTCTCG < NC_000913_3_pae_tpiA/3547936‑3547788 GTTCAAAGAGTGCTTTAACCTGGCTATCGGCGAGACCAGCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCC < 2:243051/150‑1GTTCAAAGAGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCC < 1:299757/150‑1 TTCAAAGAGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCT > 3:322659/1‑150 TTCAAAGAGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCT > 2:434972/1‑150 TCAAAGAGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTT > 2:240442/1‑150 CAAAGAGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTA > 2:449928/1‑150 AAAGAGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTAT > 2:50186/1‑150 AAAGAGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTAT > 2:309120/1‑150 AAAGAGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTAT > 1:577241/1‑150 AAGAGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATC > 2:672765/1‑150 AGAGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCC > 1:262632/1‑150 GAGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCG > 1:123406/1‑150 GAGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCG > 1:527766/1‑150 AGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGG < 3:375100/150‑1 AGTACTTGAGCCTGACTATCGGCGAGACCATCAAATCCTGGTGGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGG < 2:92484/150‑1 GTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGC < 1:434972/150‑1 GTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGC < 3:66250/150‑1 CTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGCCTA > 1:412529/1‑150 TTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGCCTAC > 1:647459/1‑150 TTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGCCTAC > 3:531996/1‑150 TTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGCCTAC > 2:7602/1‑150 TTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGCCTAC > 2:489343/1‑150 ccAGACCATCAAATCCTGGTCGGTGCTGGAAACCAGTAGTTCGTTATGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACGGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTGTCCGGCCTACTAATTCGTCCCGAATCG < 2:24648/148‑1 CGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGCCTACTAATTCATCCCGAATCG < 2:412529/150‑1 GACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAG < 1:931166/150‑1 CCATCAAATCCTGGTCGATGCTGGAATCCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGAATGCCGGACGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTGATCCCGAATCGTA < 3:372267/150‑1 CCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGG < 1:449928/150‑1 TCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGA < 1:601675/119‑1 TCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGA > 2:601675/1‑119 GTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCG > 1:582136/1‑72 GTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCG < 2:582136/72‑1 TGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGCCTACTAATT < 2:909534/73‑1 TGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGCCTACTAATT > 1:909534/1‑73 CCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGCCTACTAATTCATCCCGAATCGTAG > 2:562155/1‑53 CCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGCCTACTAATTCATCCCGAATCGTAG < 1:562155/53‑1 CTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCACCATATTCAGCAGCAGACAGCCTACCAGACCGCACACCGAGATAATGGTTTCCAGCATCGACCAGGA > 4:218379/1‑150 TTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCACCATATTCAGCAGCAGACAGCCTACCAGACCGCACACCGAGATAATGGTTTCCAGCATCGACCAGGAT > 1:222903/1‑150 TATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCACCATATTCAGCAGCAGACAGCCTACCAGACCGCACACCGAGATAATGGCTTCCAGCATCGACCAGGATT > 2:888130/1‑150 ATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCACCATATTCAGCAGCAGACAGCCTACCAGACCGCACACCGAGATAATGGTTTCCAGCATCGACCAGGATTT > 1:98776/1‑150 TCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCACCATATTCAGCAGCAGACAGCCTACCAGACCGCACACCGAGATAATGGTTTCCAGCATCGACCAGGATTTG > 2:647459/1‑150 TCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCACCATATTCAGCAGCAGACAGCCTACCAGACCGCACACCGAGATAATGGTTTCCA < 2:543637/133‑1 TCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCACCATATTCAGCAGCAGACAGCCTACCAGACCGCACACCGAGATAATGGTTTCCA > 1:543637/1‑133 ctacttTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCACCATATTCAGCAGCAGACAGCCTACCAGACCGCACACCGAGATAATGGTTTCCAGCATCGACCAGGATTTGA < 3:574233/144‑1 CGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCACCATATTCAGCAGCAGACAGCCTACCAGACCGCACACCGAGATAATGGTTTCCAGCATCGACCAGGATTTGAT < 2:222903/150‑1 GGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCACCATATTCAGCAGCAGACAGCCTACCAGACCGCACACCGAGATAATGGTTTCCAGCATCGACCAGGATTTGATG < 4:92157/150‑1 CTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCACCATATTCAGCAGCAGACAGCCTACCAGACCGCACACCGAGATAATGGTTTCCAGCATCGACCAGGATTTGATGGTC > 4:332353/1‑150 TACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTT < 2:449070/63‑1 TACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTT > 1:449070/1‑63 CTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCACCATATTCAGCAGCAGACAGCCTACCAGACCGCACACCGAGATAATGGTTTCCAGCACCGACCAGGAATTGAAGGGCTCG > 2:76030/1‑150 GTTCAAAGAGTACTTTAACCTGACTATCGGCGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCG‑‑GCGTGAC‑CGCCTTATCCGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/3547758‑3547920‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttatccggcctacTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCACCATATTCAGCAGCAGACAGCCTACCAGACCGCACACCGAGATAATGGTTTCCAGCATCGACCAGGATTTGATGGTCTCG < NC_000913_3_pae_tpiA/3547936‑3547788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |